myRT

myRT report for GCA_001992815.1_ASM199281v1

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Seq: MUUM01000016.1 Burkholderia cenocepacia strain VC9842 VC9842_contig-2, whole genome shotgun sequence (143654 bp)
Overview 1 RT 1: 109795-114207 bp Neighborhood of RT #1 [109795, 114207] DUF1566 Avd_like RVT-DGRs Dcm Dcm Feature: gene Location: 109795-110259 bp Ori: ONW91695.1 Feature: domain Description: DUF1566 Location: 110056-110236 bp Feature: domain Description: DUF1 566 Location: 1 1 0056-1 1 0236 bp Feature: gene Location: 110274-110630 bp Ori: ONW91696.1 Feature: domain Description: Avd_like Location: 110301-110607 bp Feature: domain Description: Avd_like Location: 1 1 0301 -1 1 0607 bp Feature: gene Location: 110974-111972 bp Ori: ONW91697.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 111067-111754 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 1 1 067-1 1 1 754 bp Feature: gene Location: 112031-113932 bp Ori: ONW91741.1 Feature: domain Description: Dcm Location: 112064-112670 bp Feature: domain Description: Dcm Location: 1 1 2064-1 1 2670 bp Feature: domain Description: Dcm Location: 113669-113828 bp Feature: domain Description: Dcm Location: 1 1 3669-1 1 3828 bp Feature: gene Location: 113947-114207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, Dcm (COG0270)

Seq: MUUM01000070.1 Burkholderia cenocepacia strain VC9842 VC9842_contig-7000008, whole genome shotgun sequence (141157 bp)
Overview 1 RT 1: 11789-15538 bp Neighborhood of RT #1 [11789, 15609] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 11789-12544 bp Ori: ONW84065.1 Feature: domain Description: his_ut_repres Location: 11867-12539 bp Feature: domain Description: his_ut_repres Location: 11867-12 539 bp Feature: gene Location: 12779-13351 bp Ori: ONW84066.1 Feature: domain Description: FIN Location: 12965-13316 bp Feature: domain Description: FIN Location: 12 965-13316 bp Feature: gene Location: 13605-14954 bp Ori: ONW84067.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14070-14706 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14070-14706 bp Feature: gene Location: 14927-15133 bp Feature: gene Location: 15280-15609 bp Ori: ONW84069.1 Feature: domain Description: Histone_HNS Location: 15301-15538 bp Feature: domain Description: Histone_HNS Location: 15301-15538 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUUM01000112.1 Burkholderia cenocepacia strain VC9842 VC9842_contig-15, whole genome shotgun sequence (95513 bp)
Overview 1 RT 1: 90185-95448 bp Neighborhood of RT #1 [90185, 95513] HATPase_c_3 RVT-UG5 rve_3 Feature: gene Location: 90185-90874 bp Feature: gene Location: 91126-93141 bp Ori: ONW77565.1 Feature: domain Description: HATPase_c_3 Location: 91195-91519 bp Feature: domain Description: HATPase_c_3 Location: 91195-91519 bp Feature: gene Location: 93669-95123 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 93678-94152 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 93 678-94152 bp Feature: gene Location: 95172-95513 bp Ori: ONW77578.1 Feature: domain Description: rve_3 Location: 95250-95448 bp Feature: domain Description: rve_3 Location: 95250-95448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, rve_3 (pfam13683)

Seq: MUUM01000027.1 Burkholderia cenocepacia strain VC9842 VC9842_contig-6000003, whole genome shotgun sequence (7644 bp)
Overview 1 RT 1: 1439-6047 bp Neighborhood of RT #1 [1439, 6055] COG3547 RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 1439-1633 bp Feature: gene Location: 2013-3047 bp Ori: ONW90623.1 Feature: domain Description: COG3547 Location: 2028-2991 bp Feature: domain Description: COG354 7 Location: 2028-2991 bp Feature: gene Location: 3218-4585 bp Ori: ONW90624.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3551-4166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3551-4 166 bp Feature: domain Description: GIIM Note: maturase Location: 4226-4427 bp Feature: domain Description: GIIM Note: maturase Location: 4 226-4 4 27 bp Feature: gene Location: 4693-5580 bp Ori: ONW90625.1 Feature: domain Description: RsmI Location: 4741-5554 bp Feature: domain Description: RsmI Location: 4 74 1-5554 bp Feature: gene Location: 5579-6055 bp Ori: ONW90626.1 Feature: domain Description: PRK14673 Location: 5630-6047 bp Feature: domain Description: PRK14 673 Location: 5630-604 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)