myRT

myRT report for GCA_001992825.1_ASM199282v1

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Seq: MUUN01000052.1 Burkholderia cenocepacia strain VC10567 VC10567_contig-15000005, whole genome shotgun sequence (73335 bp)
Overview 1 RT 1: 1439-7653 bp Neighborhood of RT #1 [1439, 7694] COG3547 RVT-GII GIIM RpiR PRK09054 Feature: gene Location: 1439-1633 bp Feature: gene Location: 2013-3047 bp Feature: domain Description: COG3547 Location: 2028-2991 bp Feature: domain Description: COG3547 Location: 2028-2991 bp Feature: gene Location: 3218-4585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3551-4166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3551 -41 66 bp Feature: domain Description: GIIM Note: maturase Location: 4226-4427 bp Feature: domain Description: GIIM Note: maturase Location: 4226-4427 bp Feature: gene Location: 4695-5543 bp Feature: domain Description: RpiR Location: 4698-5520 bp Feature: domain Description: RpiR Location: 4698-5520 bp Feature: gene Location: 5838-7694 bp Feature: domain Description: PRK09054 Location: 5850-7653 bp Feature: domain Description: PRK09054 Location: 5850-7653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RpiR (COG1737), PRK09054 (phosphogluconate dehydratase; Validated)

Seq: MUUN01000061.1 Burkholderia cenocepacia strain VC10567 VC10567_contig-8000006, whole genome shotgun sequence (9997 bp)
Overview 1 RT 1: 2179-9995 bp Neighborhood of RT #1 [2179, 9997] GIIM HNHc DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf COG3547 Feature: gene Location: 2179-2844 bp Feature: domain Description: GIIM Note: maturase Location: 2182-2407 bp Feature: domain Description: GIIM Note: maturase Location: 2 182 -2 407 bp Feature: domain Description: HNHc Note: nucleases Location: 2641-2797 bp Feature: domain Description: HNHc Note: nucleases Location: 2 641-2 797 bp Feature: gene Location: 2990-5905 bp Feature: domain Description: DUF4158 Location: 3029-3494 bp Feature: domain Description: DUF4158 Location: 302 9-3494 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 4682-5828 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 4682 -582 8 bp Feature: gene Location: 6036-7106 bp Feature: RT Description: RVT_N Location: 6093-6330 bp Feature: RT Description: RVT_N Location: 6093-6330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6381-7032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6381-7032 bp Feature: gene Location: 7702-8757 bp Feature: domain Description: DEXHc_Snf Location: 7921-8176 bp Feature: domain Description: DEXHc_Snf Location: 792 1-8176 bp Feature: gene Location: 9092-9997 bp Feature: domain Description: COG3547 Location: 9116-9995 bp Feature: domain Description: COG3547 Location: 9116-9995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, DEXHc_Snf (cd17919), COG3547 (Transposase )

Seq: MUUN01000112.1 Burkholderia cenocepacia strain VC10567 VC10567_contig-9000013, whole genome shotgun sequence (143656 bp)
Overview 1 RT 1: 29448-33837 bp Neighborhood of RT #1 [29448, 33860] Dcm Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29448-29708 bp Feature: gene Location: 29723-31624 bp Feature: domain Description: Dcm Location: 29756-30362 bp Feature: domain Description: Dcm Location: 29756-3 03 62 bp Feature: domain Description: Dcm Location: 31361-31520 bp Feature: domain Description: Dcm Location: 3 13 61-3 1520 bp Feature: gene Location: 31683-32681 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31776-32463 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 1776-3 2463 bp Feature: gene Location: 33025-33381 bp Feature: domain Description: Avd_like Location: 33052-33358 bp Feature: domain Description: Avd_like Location: 3 3 052-3 3 3 58 bp Feature: gene Location: 33396-33860 bp Feature: domain Description: DUF1566 Location: 33657-33837 bp Feature: domain Description: DUF1566 Location: 3 3 657-3 3 83 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: MUUN01000086.1 Burkholderia cenocepacia strain VC10567 VC10567_contig-9000009, whole genome shotgun sequence (277762 bp)
Overview 1 RT 1: 261964-265779 bp Neighborhood of RT #1 [261964, 265784] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 261964-262293 bp Feature: domain Description: Histone_HNS Location: 261985-262222 bp Feature: domain Description: Histone_HNS Location: 261985-262222 bp Feature: gene Location: 262440-262646 bp Feature: gene Location: 262619-263968 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 263084-263720 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 263084 -263720 bp Feature: gene Location: 264222-264794 bp Feature: domain Description: FIN Location: 264408-264759 bp Feature: domain Description: FIN Location: 264 4 08-264 759 bp Feature: gene Location: 265029-265784 bp Feature: domain Description: his_ut_repres Location: 265107-265779 bp Feature: domain Description: his_ut_repres Location: 265107-265779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)