myRT

myRT report for GCA_001992855.1_ASM199285v1

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Seq: MUUR01000175.1 Burkholderia cenocepacia strain VC13178 VC13178_contig-10000013, whole genome shotgun sequence (54340 bp)
Overview 1 RT 1: 25711-30040 bp Neighborhood of RT #1 [25711, 30040] PRK12511 COG4315 RVT-GII GIIM COG3547 Feature: gene Location: 25711-26226 bp Ori: ONX37156.1 Feature: domain Description: PRK12511 Location: 25723-26218 bp Feature: domain Description: PRK1 251 1 Location: 25723-2621 8 bp Feature: gene Location: 26254-26613 bp Ori: ONX37157.1 Feature: domain Description: COG4315 Location: 26275-26611 bp Feature: domain Description: COG431 5 Location: 26275-2661 1 bp Feature: gene Location: 26894-28261 bp Ori: ONX37158.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27227-27842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27227-27842 bp Feature: domain Description: GIIM Note: maturase Location: 27902-28103 bp Feature: domain Description: GIIM Note: maturase Location: 27902-281 03 bp Feature: gene Location: 28432-29466 bp Ori: ONX37159.1 Feature: domain Description: COG3547 Location: 28447-29410 bp Feature: domain Description: COG3547 Location: 28447-2941 0 bp Feature: gene Location: 29846-30040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12511 (RNA polymerase sigma factor; Provisional), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUUR01000152.1 Burkholderia cenocepacia strain VC13178 VC13178_contig-16000011, whole genome shotgun sequence (25523 bp)
Overview 1 RT 1: 1-7174 bp Neighborhood of RT #1 [1, 7221] COG3547 DEXHc_Snf RVT_N RVT-GII DUF4158 DDE_Tnp_Tn3 GIIM HNHc Feature: gene Location: 1-308 bp Ori: ONX39581.1 Feature: domain Description: COG3547 Location: 25-307 bp Feature: domain Description: COG3547 Location: 2 5-307 bp Feature: gene Location: 643-1698 bp Ori: ONX39570.1 Feature: domain Description: DEXHc_Snf Location: 862-1117 bp Feature: domain Description: DEXHc_Snf Location: 862 -1117 bp Feature: gene Location: 2294-3364 bp Feature: domain Description: RVT_N Location: 2351-2588 bp Feature: domain Description: RVT_N Location: 2 351-2 588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2639-3290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 639-32 90 bp Feature: gene Location: 3495-6410 bp Ori: ONX39582.1 Feature: domain Description: DUF4158 Location: 3534-3999 bp Feature: domain Description: DUF4158 Location: 3534-3999 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5187-6333 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5187-6333 bp Feature: gene Location: 6556-7221 bp Feature: domain Description: GIIM Note: maturase Location: 6559-6784 bp Feature: domain Description: GIIM Note: maturase Location: 6559-6784 bp Feature: domain Description: HNHc Note: nucleases Location: 7018-7174 bp Feature: domain Description: HNHc Note: nucleases Location: 7018-7174 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), GIIM (pfam08388), HNHc (smart00507)

Seq: MUUR01000146.1 Burkholderia cenocepacia strain VC13178 VC13178_contig-10000011, whole genome shotgun sequence (4896 bp)
Overview 1 RT 1: 1-3048 bp Neighborhood of RT #1 [1, 4670] Tra5 RVT-UG5 HATPase_c_3 Feature: gene Location: 1-624 bp Ori: ONX39745.1 Feature: domain Description: Tra5 Location: 7-592 bp Feature: domain Description: Tra5 Location: 7-592 bp Feature: gene Location: 673-2127 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 682-1156 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 682-1156 bp Feature: gene Location: 2655-4670 bp Ori: ONX39746.1 Feature: domain Description: HATPase_c_3 Location: 2724-3048 bp Feature: domain Description: HATPase_c_3 Location: 2724-3 048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-UG5, HATPase_c_3 (pfam13589)

Seq: MUUR01000122.1 Burkholderia cenocepacia strain VC13178 VC13178_contig-10, whole genome shotgun sequence (217825 bp)
Overview 1 RT 1: 109771-114183 bp Neighborhood of RT #1 [109771, 114183] DUF1566 Avd_like RVT-DGRs Dcm Dcm Feature: gene Location: 109771-110235 bp Ori: ONX41834.1 Feature: domain Description: DUF1566 Location: 110032-110212 bp Feature: domain Description: DUF1566 Location: 110032-110212 bp Feature: gene Location: 110250-110606 bp Ori: ONX41835.1 Feature: domain Description: Avd_like Location: 110277-110583 bp Feature: domain Description: Avd_like Location: 110277-110583 bp Feature: gene Location: 110950-111948 bp Ori: ONX41836.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 111043-111730 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11104 3-111730 bp Feature: gene Location: 112007-113908 bp Ori: ONX41939.1 Feature: domain Description: Dcm Location: 112040-112646 bp Feature: domain Description: Dcm Location: 11204 0-11264 6 bp Feature: domain Description: Dcm Location: 113645-113804 bp Feature: domain Description: Dcm Location: 11364 5-113804 bp Feature: gene Location: 113923-114183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, Dcm (COG0270)

Seq: MUUR01000081.1 Burkholderia cenocepacia strain VC13178 VC13178_contig-1000007, whole genome shotgun sequence (114146 bp)
Overview 1 RT 1: 98005-101820 bp Neighborhood of RT #1 [98005, 101825] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 98005-98334 bp Ori: ONX45341.1 Feature: domain Description: Histone_HNS Location: 98026-98263 bp Feature: domain Description: Histone_HNS Location: 98026-98263 bp Feature: gene Location: 98481-98687 bp Feature: gene Location: 98660-100009 bp Ori: ONX45343.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 99125-99761 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 99125 -99761 bp Feature: gene Location: 100263-100835 bp Ori: ONX45344.1 Feature: domain Description: FIN Location: 100449-100800 bp Feature: domain Description: FIN Location: 100449-100800 bp Feature: gene Location: 101070-101825 bp Ori: ONX45345.1 Feature: domain Description: his_ut_repres Location: 101148-101820 bp Feature: domain Description: his_ut_repres Location: 101148-101820 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)