myRT

myRT report for GCA_001992875.1_ASM199287v1

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Seq: MUUV01000005.1 Burkholderia cenocepacia strain VC7722 VC7722_contig-4000000, whole genome shotgun sequence (33923 bp)
Overview 1 RT 1: 30532-33315 bp Neighborhood of RT #1 [30532, 33744] D RVT-GII Feature: gene Location: 30532-31602 bp Feature: domain Description: D Location: 30586-31570 bp Feature: domain Description: D Location: 30586-31 570 bp Feature: gene Location: 31790-32086 bp Feature: gene Location: 32214-33744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32625-33315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32625-3331 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MUUV01000265.1 Burkholderia cenocepacia strain VC7722 VC7722_contig-15, whole genome shotgun sequence (102765 bp)
Overview 1 RT 1: 45163-48912 bp Neighborhood of RT #1 [45163, 48983] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 45163-45918 bp Feature: domain Description: his_ut_repres Location: 45241-45913 bp Feature: domain Description: his_ut_repres Location: 452 41-45913 bp Feature: gene Location: 46153-46725 bp Feature: domain Description: FIN Location: 46339-46690 bp Feature: domain Description: FIN Location: 46339-46690 bp Feature: gene Location: 46979-48328 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47444-48080 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47444-48080 bp Feature: gene Location: 48301-48507 bp Feature: gene Location: 48654-48983 bp Feature: domain Description: Histone_HNS Location: 48675-48912 bp Feature: domain Description: Histone_HNS Location: 48675-48912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUUV01000144.1 Burkholderia cenocepacia strain VC7722 VC7722_contig-10000008, whole genome shotgun sequence (9041 bp)
Overview 1 RT 1: 4857-8408 bp Neighborhood of RT #1 [4857, 8416] TnpB_IS66 RVT-GII PRK09409 PRK09183 Feature: gene Location: 4857-5189 bp Feature: domain Description: TnpB_IS66 Location: 4884-5172 bp Feature: domain Description: TnpB_IS66 Location: 4884-5172 bp Feature: gene Location: 5193-5515 bp Feature: gene Location: 5519-6454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5930-6446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 593 0-6446 bp Feature: gene Location: 6485-7372 bp Feature: domain Description: PRK09409 Location: 6488-7355 bp Feature: domain Description: PRK09409 Location: 6488-73 55 bp Feature: gene Location: 7643-8416 bp Feature: domain Description: PRK09183 Location: 7646-8408 bp Feature: domain Description: PRK09183 Location: 7646-8408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, PRK09409 (IS2 transposase TnpB; Reviewed), PRK09183 (transposase/IS protein; Provisional)

Seq: MUUV01000204.1 Burkholderia cenocepacia strain VC7722 VC7722_contig-12, whole genome shotgun sequence (103947 bp)
Overview 1 RT 1: 100297-103624 bp Neighborhood of RT #1 [100297, 103782] Gmd GDP_MD_SDR_e RVT-GII GIIM Feature: gene Location: 100297-101343 bp Feature: domain Description: Gmd Location: 100312-101329 bp Feature: domain Description: Gmd Location: 100312-101329 bp Feature: gene Location: 101330-102295 bp Feature: domain Description: GDP_MD_SDR_e Location: 101366-102263 bp Feature: domain Description: GDP_MD_SDR_e Location: 101366-102263 bp Feature: gene Location: 102415-103782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102748-103363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10274 8-103363 bp Feature: domain Description: GIIM Note: maturase Location: 103423-103624 bp Feature: domain Description: GIIM Note: maturase Location: 1034 23-103624 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388)

Seq: MUUV01000051.1 Burkholderia cenocepacia strain VC7722 VC7722_contig-18000002, whole genome shotgun sequence (16292 bp)
Overview 1 RT 1: 13025-16047 bp Neighborhood of RT #1 [13025, 16205] COG3547 RVT-GII GIIM Feature: gene Location: 13025-13324 bp Feature: gene Location: 13633-14667 bp Feature: domain Description: COG3547 Location: 13648-14611 bp Feature: domain Description: COG35 47 Location: 13648-14611 bp Feature: gene Location: 14838-16205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15171-15786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 171-15 786 bp Feature: domain Description: GIIM Note: maturase Location: 15846-16047 bp Feature: domain Description: GIIM Note: maturase Location: 15 846-16047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: MUUV01000191.1 Burkholderia cenocepacia strain VC7722 VC7722_contig-8000011, whole genome shotgun sequence (30900 bp)
Overview 1 RT 1: 1-2691 bp Neighborhood of RT #1 [1, 2691] RVT-GII Feature: gene Location: 1-1322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412-1102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412-1102 bp Feature: gene Location: 1894-2313 bp Feature: gene Location: 2476-2691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MUUV01000176.1 Burkholderia cenocepacia strain VC7722 VC7722_contig-6000010, whole genome shotgun sequence (22183 bp)
Overview 1 RT 1: 18346-21963 bp Neighborhood of RT #1 [18346, 22183] PolY_like COG4544 RVT-GII Feature: gene Location: 18346-19824 bp Feature: domain Description: PolY_like Location: 18364-19351 bp Feature: domain Description: PolY_like Location: 18364-19351 bp Feature: gene Location: 19745-20461 bp Feature: domain Description: COG4544 Location: 19850-20285 bp Feature: domain Description: COG4544 Location: 19850-20285 bp Feature: gene Location: 20862-22183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21273-21963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2127 3-21963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII

Seq: MUUV01000054.1 Burkholderia cenocepacia strain VC7722 VC7722_contig-1000003, whole genome shotgun sequence (57137 bp)
Overview 1 RT 1: 52777-56527 bp Neighborhood of RT #1 [52777, 56958] SRAP RVT-GII Feature: gene Location: 52777-53763 bp Feature: gene Location: 54459-55370 bp Feature: domain Description: SRAP Location: 54822-55335 bp Feature: domain Description: SRAP Location: 548 22-55335 bp Feature: gene Location: 55426-56958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55837-56527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 558 37-56527 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MUUV01000061.1 Burkholderia cenocepacia strain VC7722 VC7722_contig-8000003, whole genome shotgun sequence (27279 bp)
Overview 1 RT 1: 166-5959 bp Neighborhood of RT #1 [166, 6006] RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 166-1533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49 9 -1114 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: gene Location: 1677-4139 bp Feature: domain Description: MscK Location: 1755-4098 bp Feature: domain Description: MscK Location: 1755-409 8 bp Feature: gene Location: 4588-6006 bp Feature: domain Description: MFS_SV2_like Location: 4708-5959 bp Feature: domain Description: MFS_SV2_like Location: 4708-59 59 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)