myRT

myRT report for GCA_001992895.1_ASM199289v1

Download annotations/find similar RTs

Seq: MUUU01000140.1 Burkholderia cenocepacia strain VC7718 VC7718_contig-11000010, whole genome shotgun sequence (13818 bp)
Overview 1 RT 1: 9981-13598 bp Neighborhood of RT #1 [9981, 13818] PolY_like COG4544 RVT-GII Feature: gene Location: 9981-11459 bp Feature: domain Description: PolY_like Location: 9999-10986 bp Feature: domain Description: PolY_like Location: 9999-1 0986 bp Feature: gene Location: 11380-12096 bp Feature: domain Description: COG4544 Location: 11485-11920 bp Feature: domain Description: COG4544 Location: 1 1 485-1 1 920 bp Feature: gene Location: 12497-13818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12908-13598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2908-1 3598 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4544 (Uncharacterized conserved protein ), RVT-GII, PolY_like (cd03468)

Seq: MUUU01000088.1 Burkholderia cenocepacia strain VC7718 VC7718_contig-7, whole genome shotgun sequence (137145 bp)
Overview 1 RT 1: 84165-87980 bp Neighborhood of RT #1 [84165, 87985] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 84165-84494 bp Feature: domain Description: Histone_HNS Location: 84186-84423 bp Feature: domain Description: Histone_HNS Location: 84186-8442 3 bp Feature: gene Location: 84641-84847 bp Feature: gene Location: 84820-86169 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 85285-85921 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 852 85-8592 1 bp Feature: gene Location: 86423-86995 bp Feature: domain Description: FIN Location: 86609-86960 bp Feature: domain Description: FIN Location: 86609-86960 bp Feature: gene Location: 87230-87985 bp Feature: domain Description: his_ut_repres Location: 87308-87980 bp Feature: domain Description: his_ut_repres Location: 87308-87980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUUU01000054.1 Burkholderia cenocepacia strain VC7718 VC7718_contig-15000003, whole genome shotgun sequence (167889 bp)
Overview 1 RT 1: 60127-67780 bp Neighborhood of RT #1 [60127, 67780] MFS_SV2_like MscK RVT-GII GIIM COG3547 Feature: gene Location: 60127-61545 bp Feature: domain Description: MFS_SV2_like Location: 60247-61498 bp Feature: domain Description: MFS_SV2_like Location: 60247-61498 bp Feature: gene Location: 61994-64456 bp Feature: domain Description: MscK Location: 62072-64415 bp Feature: domain Description: MscK Location: 62072-64415 bp Feature: gene Location: 64600-65967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64933-65548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6493 3 -65548 bp Feature: domain Description: GIIM Note: maturase Location: 65608-65809 bp Feature: domain Description: GIIM Note: maturase Location: 65608-65809 bp Feature: gene Location: 66138-67172 bp Feature: domain Description: COG3547 Location: 66153-67116 bp Feature: domain Description: COG3 547 Location: 66153 -67116 bp Feature: gene Location: 67481-67780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_SV2_like (cd17316), MscK (COG3264), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUUU01000204.1 Burkholderia cenocepacia strain VC7718 VC7718_contig-5000015, whole genome shotgun sequence (44026 bp)
Overview 1 RT 1: 40376-43703 bp Neighborhood of RT #1 [40376, 43861] Gmd GDP_MD_SDR_e RVT-GII GIIM Feature: gene Location: 40376-41422 bp Feature: domain Description: Gmd Location: 40391-41408 bp Feature: domain Description: Gmd Location: 4 0391-4 14 08 bp Feature: gene Location: 41409-42374 bp Feature: domain Description: GDP_MD_SDR_e Location: 41445-42342 bp Feature: domain Description: GDP_MD_SDR_e Location: 4 14 4 5-4 234 2 bp Feature: gene Location: 42494-43861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42827-43442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 2827-4 34 4 2 bp Feature: domain Description: GIIM Note: maturase Location: 43502-43703 bp Feature: domain Description: GIIM Note: maturase Location: 4 3502-4 3703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388)

Seq: MUUU01000112.1 Burkholderia cenocepacia strain VC7718 VC7718_contig-13000008, whole genome shotgun sequence (8656 bp)
Overview 1 RT 1: 4712-8263 bp Neighborhood of RT #1 [4712, 8271] TnpB_IS66 RVT-GII PRK09409 PRK09183 Feature: gene Location: 4712-5044 bp Feature: domain Description: TnpB_IS66 Location: 4739-5027 bp Feature: domain Description: TnpB_IS66 Location: 4739-5 027 bp Feature: gene Location: 5048-5370 bp Feature: gene Location: 5374-6309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5785-6301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 785 -6301 bp Feature: gene Location: 6340-7227 bp Feature: domain Description: PRK09409 Location: 6343-7210 bp Feature: domain Description: PRK09409 Location: 6343-7210 bp Feature: gene Location: 7498-8271 bp Feature: domain Description: PRK09183 Location: 7501-8263 bp Feature: domain Description: PRK09183 Location: 75 01-8263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, PRK09409 (IS2 transposase TnpB; Reviewed), PRK09183 (transposase/IS protein; Provisional)

Seq: MUUU01000182.1 Burkholderia cenocepacia strain VC7718 VC7718_contig-8000013, whole genome shotgun sequence (89371 bp)
Overview 1 RT 1: 44561-49110 bp Neighborhood of RT #1 [44561, 49142] RVT-GII D Feature: gene Location: 44561-44776 bp Feature: gene Location: 44939-45358 bp Feature: gene Location: 45930-47460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46341-47031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46 341-47031 bp Feature: gene Location: 47588-47884 bp Feature: gene Location: 48072-49142 bp Feature: domain Description: D Location: 48126-49110 bp Feature: domain Description: D Location: 48126 -49110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, D (PHA02561)

Seq: MUUU01000039.1 Burkholderia cenocepacia strain VC7718 VC7718_contig-3, whole genome shotgun sequence (56527 bp)
Overview 1 RT 1: 52167-55917 bp Neighborhood of RT #1 [52167, 56348] SRAP RVT-GII Feature: gene Location: 52167-53153 bp Feature: gene Location: 53849-54760 bp Feature: domain Description: SRAP Location: 54209-54725 bp Feature: domain Description: SRAP Location: 54209-547 25 bp Feature: gene Location: 54816-56348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55227-55917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55227 -55917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII