myRT

myRT report for GCA_001992915.1_ASM199291v1

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Seq: MUUW01000056.1 Burkholderia cenocepacia strain VC7723 VC7723_contig-7000005, whole genome shotgun sequence (3274 bp)
Overview 1 RT 1: 7-3029 bp Neighborhood of RT #1 [7, 3187] COG3547 RVT-GII GIIM Feature: gene Location: 7-306 bp Feature: gene Location: 615-1649 bp Feature: domain Description: COG3547 Location: 630-1593 bp Feature: domain Description: COG3547 Location: 630-1 593 bp Feature: gene Location: 1820-3187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2153-2768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 53-2768 bp Feature: domain Description: GIIM Note: maturase Location: 2828-3029 bp Feature: domain Description: GIIM Note: maturase Location: 2828-3029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUUW01000109.1 Burkholderia cenocepacia strain VC7723 VC7723_contig-6000010, whole genome shotgun sequence (22045 bp)
Overview 1 RT 1: 18208-21825 bp Neighborhood of RT #1 [18208, 22045] PolY_like COG4544 RVT-GII Feature: gene Location: 18208-19686 bp Feature: domain Description: PolY_like Location: 18226-19213 bp Feature: domain Description: PolY_like Location: 182 2 6-192 13 bp Feature: gene Location: 19607-20323 bp Feature: domain Description: COG4544 Location: 19712-20147 bp Feature: domain Description: COG4544 Location: 19712 -2 0147 bp Feature: gene Location: 20724-22045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21135-21825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1135-2 182 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII

Seq: MUUW01000046.1 Burkholderia cenocepacia strain VC7723 VC7723_contig-6000004, whole genome shotgun sequence (5944 bp)
Overview 1 RT 1: 4244-5833 bp Neighborhood of RT #1 [4244, 5841] TnpB_IS66 RVT-GII Feature: gene Location: 4244-4576 bp Feature: domain Description: TnpB_IS66 Location: 4271-4559 bp Feature: domain Description: TnpB_IS66 Location: 4271-4559 bp Feature: gene Location: 4580-4902 bp Feature: gene Location: 4906-5841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5317-5833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 17-583 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII

Seq: MUUW01000011.1 Burkholderia cenocepacia strain VC7723 VC7723_contig-3000001, whole genome shotgun sequence (89546 bp)
Overview 1 RT 1: 44555-49104 bp Neighborhood of RT #1 [44555, 49136] RVT-GII D Feature: gene Location: 44555-44770 bp Feature: gene Location: 44933-45352 bp Feature: gene Location: 45924-47454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46335-47025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 6335-4 7025 bp Feature: gene Location: 47582-47878 bp Feature: gene Location: 48066-49136 bp Feature: domain Description: D Location: 48120-49104 bp Feature: domain Description: D Location: 4 8120-4 9104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, D (PHA02561)

Seq: MUUW01000014.1 Burkholderia cenocepacia strain VC7723 VC7723_contig-2, whole genome shotgun sequence (137082 bp)
Overview 1 RT 1: 49080-52829 bp Neighborhood of RT #1 [49080, 52900] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49080-49835 bp Feature: domain Description: his_ut_repres Location: 49158-49830 bp Feature: domain Description: his_ut_repres Location: 4915 8-49830 bp Feature: gene Location: 50070-50642 bp Feature: domain Description: FIN Location: 50256-50607 bp Feature: domain Description: FIN Location: 5 025 6-5 0607 bp Feature: gene Location: 50896-52245 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51361-51997 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5 1361-5 1997 bp Feature: gene Location: 52218-52424 bp Feature: gene Location: 52571-52900 bp Feature: domain Description: Histone_HNS Location: 52592-52829 bp Feature: domain Description: Histone_HNS Location: 5 25 92-5 2829 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUUW01000029.1 Burkholderia cenocepacia strain VC7723 VC7723_contig-1000003, whole genome shotgun sequence (56527 bp)
Overview 1 RT 1: 52167-55917 bp Neighborhood of RT #1 [52167, 56348] SRAP RVT-GII Feature: gene Location: 52167-53153 bp Feature: gene Location: 53849-54760 bp Feature: domain Description: SRAP Location: 54209-54725 bp Feature: domain Description: SRAP Location: 54209-54725 bp Feature: gene Location: 54816-56348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55227-55917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55227-55917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MUUW01000103.1 Burkholderia cenocepacia strain VC7723 VC7723_contig-10, whole genome shotgun sequence (123767 bp)
Overview 1 RT 1: 120117-123444 bp Neighborhood of RT #1 [120117, 123602] Gmd GDP_MD_SDR_e RVT-GII GIIM Feature: gene Location: 120117-121163 bp Feature: domain Description: Gmd Location: 120132-121149 bp Feature: domain Description: Gmd Location: 120132-121149 bp Feature: gene Location: 121150-122115 bp Feature: domain Description: GDP_MD_SDR_e Location: 121186-122083 bp Feature: domain Description: GDP_MD_SDR_e Location: 121186-122083 bp Feature: gene Location: 122235-123602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122568-123183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122568-123183 bp Feature: domain Description: GIIM Note: maturase Location: 123243-123444 bp Feature: domain Description: GIIM Note: maturase Location: 123243-123444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388)