myRT

myRT report for GCA_001992925.1_ASM199292v1

Download annotations/find similar RTs

Seq: MUUX01000050.1 Burkholderia cenocepacia strain VC7880 VC7880_contig-2000003, whole genome shotgun sequence (56755 bp)
Overview 1 RT 1: 52395-56145 bp Neighborhood of RT #1 [52395, 56576] SRAP RVT-GII Feature: gene Location: 52395-53381 bp Feature: gene Location: 54077-54988 bp Feature: domain Description: SRAP Location: 54437-54953 bp Feature: domain Description: SRAP Location: 54437-54953 bp Feature: gene Location: 55044-56576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55455-56145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55455-561 45 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MUUX01000175.1 Burkholderia cenocepacia strain VC7880 VC7880_contig-11000011, whole genome shotgun sequence (89357 bp)
Overview 1 RT 1: 44563-49112 bp Neighborhood of RT #1 [44563, 49144] RVT-GII D Feature: gene Location: 44563-44778 bp Feature: gene Location: 44941-45360 bp Feature: gene Location: 45932-47462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46343-47033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46343-47033 bp Feature: gene Location: 47590-47886 bp Feature: gene Location: 48074-49144 bp Feature: domain Description: D Location: 48128-49112 bp Feature: domain Description: D Location: 4812 8-49112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, D (PHA02561)

Seq: MUUX01000164.1 Burkholderia cenocepacia strain VC7880 VC7880_contig-11, whole genome shotgun sequence (149152 bp)
Overview 1 RT 1: 49185-52934 bp Neighborhood of RT #1 [49185, 53005] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49185-49940 bp Feature: domain Description: his_ut_repres Location: 49263-49935 bp Feature: domain Description: his_ut_repres Location: 49263 -4993 5 bp Feature: gene Location: 50175-50747 bp Feature: domain Description: FIN Location: 50361-50712 bp Feature: domain Description: FIN Location: 503 61-50712 bp Feature: gene Location: 51001-52350 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51466-52102 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51466-52102 bp Feature: gene Location: 52323-52529 bp Feature: gene Location: 52676-53005 bp Feature: domain Description: Histone_HNS Location: 52697-52934 bp Feature: domain Description: Histone_HNS Location: 52697-5293 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUUX01000124.1 Burkholderia cenocepacia strain VC7880 VC7880_contig-12000008, whole genome shotgun sequence (8693 bp)
Overview 1 RT 1: 4749-8300 bp Neighborhood of RT #1 [4749, 8308] TnpB_IS66 RVT-GII PRK09409 PRK09183 Feature: gene Location: 4749-5081 bp Feature: domain Description: TnpB_IS66 Location: 4776-5064 bp Feature: domain Description: TnpB_IS66 Location: 4 776-5064 bp Feature: gene Location: 5085-5407 bp Feature: gene Location: 5411-6346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5822-6338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5822-6338 bp Feature: gene Location: 6377-7264 bp Feature: domain Description: PRK09409 Location: 6380-7247 bp Feature: domain Description: PRK094 09 Location: 6380-724 7 bp Feature: gene Location: 7535-8308 bp Feature: domain Description: PRK09183 Location: 7538-8300 bp Feature: domain Description: PRK09183 Location: 7538-8300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, PRK09409 (IS2 transposase TnpB; Reviewed), PRK09183 (transposase/IS protein; Provisional)

Seq: MUUX01000083.1 Burkholderia cenocepacia strain VC7880 VC7880_contig-11000005, whole genome shotgun sequence (94866 bp)
Overview 1 RT 1: 30057-37663 bp Neighborhood of RT #1 [30057, 37710] COG3547 RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 30057-30356 bp Feature: gene Location: 30665-31699 bp Feature: domain Description: COG3547 Location: 30680-31643 bp Feature: domain Description: COG35 47 Location: 30680-31643 bp Feature: gene Location: 31870-33237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32203-32818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32203-32818 bp Feature: domain Description: GIIM Note: maturase Location: 32878-33079 bp Feature: domain Description: GIIM Note: maturase Location: 32878-33079 bp Feature: gene Location: 33381-35843 bp Feature: domain Description: MscK Location: 33459-35802 bp Feature: domain Description: MscK Location: 3345 9-35 802 bp Feature: gene Location: 36292-37710 bp Feature: domain Description: MFS_SV2_like Location: 36412-37663 bp Feature: domain Description: MFS_SV2_like Location: 36412-37663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)

Seq: MUUX01000190.1 Burkholderia cenocepacia strain VC7880 VC7880_contig-14000012, whole genome shotgun sequence (43650 bp)
Overview 1 RT 1: 40000-43327 bp Neighborhood of RT #1 [40000, 43485] Gmd GDP_MD_SDR_e RVT-GII GIIM Feature: gene Location: 40000-41046 bp Feature: domain Description: Gmd Location: 40015-41032 bp Feature: domain Description: Gmd Location: 40015-41032 bp Feature: gene Location: 41033-41998 bp Feature: domain Description: GDP_MD_SDR_e Location: 41069-41966 bp Feature: domain Description: GDP_MD_SDR_e Location: 4106 9-4196 6 bp Feature: gene Location: 42118-43485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42451-43066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42451-4306 6 bp Feature: domain Description: GIIM Note: maturase Location: 43126-43327 bp Feature: domain Description: GIIM Note: maturase Location: 43126 -43327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388)