myRT

myRT report for GCA_001992955.1_ASM199295v1

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Seq: MUVB01000113.1 Burkholderia cenocepacia strain VC4640 VC4640_contig-3000009, whole genome shotgun sequence (89707 bp)
Overview 1 RT 1: 40566-45149 bp Neighborhood of RT #1 [40566, 45149] D RVT-GII Feature: gene Location: 40566-41636 bp Feature: domain Description: D Location: 40620-41604 bp Feature: domain Description: D Location: 40620-41 604 bp Feature: gene Location: 41824-42120 bp Feature: gene Location: 42248-43780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42659-43349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42659-43349 bp Feature: gene Location: 44352-44771 bp Feature: gene Location: 44934-45149 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MUVB01000107.1 Burkholderia cenocepacia strain VC4640 VC4640_contig-12000008, whole genome shotgun sequence (67225 bp)
Overview 1 RT 1: 2257-9863 bp Neighborhood of RT #1 [2257, 9910] COG3547 RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 2257-2556 bp Feature: gene Location: 2865-3899 bp Feature: domain Description: COG3547 Location: 2880-3843 bp Feature: domain Description: COG3547 Location: 2 880-3843 bp Feature: gene Location: 4070-5437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4403-5018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4403-5018 bp Feature: domain Description: GIIM Note: maturase Location: 5078-5279 bp Feature: domain Description: GIIM Note: maturase Location: 5078-52 79 bp Feature: gene Location: 5581-8043 bp Feature: domain Description: MscK Location: 5659-8002 bp Feature: domain Description: MscK Location: 5659-8002 bp Feature: gene Location: 8492-9910 bp Feature: domain Description: MFS_SV2_like Location: 8612-9863 bp Feature: domain Description: MFS_SV2 _like Location: 8612 -9863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)

Seq: MUVB01000025.1 Burkholderia cenocepacia strain VC4640 VC4640_contig-1000002, whole genome shotgun sequence (100339 bp)
Overview 1 RT 1: 1-1746 bp Neighborhood of RT #1 [1, 1763] PRK14702 RVT-GII TnpB_IS66 Feature: gene Location: 1-135 bp Feature: domain Description: PRK14702 Location: 4-118 bp Feature: domain Description: PRK14702 Location: 4-118 bp Feature: gene Location: 166-1101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 577-1093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 577-1093 bp Feature: gene Location: 1105-1427 bp Feature: gene Location: 1431-1763 bp Feature: domain Description: TnpB_IS66 Location: 1458-1746 bp Feature: domain Description: TnpB_IS66 Location: 1458-1746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14702 (insertion element IS2 transposase InsD; Provisional), TnpB_IS66 (pfam05717), RVT-GII

Seq: MUVB01000002.1 Burkholderia cenocepacia strain VC4640 VC4640_contig-1000000, whole genome shotgun sequence (54967 bp)
Overview 1 RT 1: 51317-54644 bp Neighborhood of RT #1 [51317, 54802] Gmd GDP_MD_SDR_e RVT-GII GIIM Feature: gene Location: 51317-52363 bp Feature: domain Description: Gmd Location: 51332-52349 bp Feature: domain Description: Gmd Location: 51332-5234 9 bp Feature: gene Location: 52350-53315 bp Feature: domain Description: GDP_MD_SDR_e Location: 52386-53283 bp Feature: domain Description: GDP_MD_SDR_e Location: 52386-53283 bp Feature: gene Location: 53435-54802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53768-54383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53768-54 383 bp Feature: domain Description: GIIM Note: maturase Location: 54443-54644 bp Feature: domain Description: GIIM Note: maturase Location: 54 4 4 3-54 64 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388)

Seq: MUVB01000133.1 Burkholderia cenocepacia strain VC4640 VC4640_contig-11, whole genome shotgun sequence (137447 bp)
Overview 1 RT 1: 49471-53220 bp Neighborhood of RT #1 [49471, 53291] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49471-50226 bp Feature: domain Description: his_ut_repres Location: 49549-50221 bp Feature: domain Description: his_ut_repres Location: 495 49-5 0221 bp Feature: gene Location: 50461-51033 bp Feature: domain Description: FIN Location: 50647-50998 bp Feature: domain Description: FIN Location: 5 0647-5 0998 bp Feature: gene Location: 51287-52636 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51752-52388 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5 175 2-5 2388 bp Feature: gene Location: 52609-52815 bp Feature: gene Location: 52962-53291 bp Feature: domain Description: Histone_HNS Location: 52983-53220 bp Feature: domain Description: Histone_HNS Location: 5 2983-5 3220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUVB01000151.1 Burkholderia cenocepacia strain VC4640 VC4640_contig-1000013, whole genome shotgun sequence (62726 bp)
Overview 1 RT 1: 180-4361 bp Neighborhood of RT #1 [180, 4361] RVT-GII SRAP Feature: gene Location: 180-1712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 591-1281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 591-1281 bp Feature: gene Location: 1768-2679 bp Feature: domain Description: SRAP Location: 2128-2644 bp Feature: domain Description: SRAP Location: 2128-26 44 bp Feature: gene Location: 3375-4361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII