myRT

myRT report for GCA_001992965.1_ASM199296v1

Download annotations/find similar RTs

Seq: MUVC01000143.1 Burkholderia cenocepacia strain VC5080 VC5080_contig-3000011, whole genome shotgun sequence (44109 bp)
Overview 1 RT 1: 40276-44109 bp Neighborhood of RT #1 [40276, 44109] D RVT-GII Feature: gene Location: 40276-41346 bp Feature: domain Description: D Location: 40330-41314 bp Feature: domain Description: D Location: 40330-41 31 4 bp Feature: gene Location: 41534-41830 bp Feature: gene Location: 41958-43490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42369-43059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42369-43059 bp Feature: gene Location: 43891-44109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MUVC01000018.1 Burkholderia cenocepacia strain VC5080 VC5080_contig-6000001, whole genome shotgun sequence (108358 bp)
Overview 1 RT 1: 44565-50115 bp Neighborhood of RT #1 [44565, 50115] RVT-GII SRAP Feature: gene Location: 44565-44780 bp Feature: gene Location: 44943-45362 bp Feature: gene Location: 45934-47466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46345-47035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46345-47035 bp Feature: gene Location: 47522-48433 bp Feature: domain Description: SRAP Location: 47882-48398 bp Feature: domain Description: SRAP Location: 47882 -48398 bp Feature: gene Location: 49129-50115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SRAP (pfam02586)

Seq: MUVC01000011.1 Burkholderia cenocepacia strain VC5080 VC5080_contig-10000000, whole genome shotgun sequence (100040 bp)
Overview 1 RT 1: 97779-100040 bp Neighborhood of RT #1 [97779, 100040] TnpB_IS66 RVT-GII Feature: gene Location: 97779-98111 bp Feature: domain Description: TnpB_IS66 Location: 97806-98094 bp Feature: domain Description: TnpB_IS66 Location: 97806-98094 bp Feature: gene Location: 98115-98437 bp Feature: gene Location: 98441-99376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98852-99368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98852-993 68 bp Feature: gene Location: 99407-100040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII

Seq: MUVC01000062.1 Burkholderia cenocepacia strain VC5080 VC5080_contig-8000005, whole genome shotgun sequence (42857 bp)
Overview 1 RT 1: 39207-42534 bp Neighborhood of RT #1 [39207, 42692] Gmd GDP_MD_SDR_e RVT-GII GIIM Feature: gene Location: 39207-40253 bp Feature: domain Description: Gmd Location: 39222-40239 bp Feature: domain Description: Gmd Location: 39222-4 0239 bp Feature: gene Location: 40240-41205 bp Feature: domain Description: GDP_MD_SDR_e Location: 40276-41173 bp Feature: domain Description: GDP_MD_SDR_e Location: 4 0276-4 1173 bp Feature: gene Location: 41325-42692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41658-42273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 1658-4 2273 bp Feature: domain Description: GIIM Note: maturase Location: 42333-42534 bp Feature: domain Description: GIIM Note: maturase Location: 4 2333-4 2534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388)

Seq: MUVC01000094.1 Burkholderia cenocepacia strain VC5080 VC5080_contig-11000007, whole genome shotgun sequence (96812 bp)
Overview 1 RT 1: 30059-37665 bp Neighborhood of RT #1 [30059, 37712] COG3547 RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 30059-30358 bp Feature: gene Location: 30667-31701 bp Feature: domain Description: COG3547 Location: 30682-31645 bp Feature: domain Description: COG35 47 Location: 30682-31645 bp Feature: gene Location: 31872-33239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32205-32820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32205 -32820 bp Feature: domain Description: GIIM Note: maturase Location: 32880-33081 bp Feature: domain Description: GIIM Note: maturase Location: 32880-33081 bp Feature: gene Location: 33383-35845 bp Feature: domain Description: MscK Location: 33461-35804 bp Feature: domain Description: MscK Location: 33461-35 804 bp Feature: gene Location: 36294-37712 bp Feature: domain Description: MFS_SV2_like Location: 36414-37665 bp Feature: domain Description: MFS_SV2_like Location: 36414-37665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)

Seq: MUVC01000053.1 Burkholderia cenocepacia strain VC5080 VC5080_contig-8000004, whole genome shotgun sequence (137159 bp)
Overview 1 RT 1: 49185-52934 bp Neighborhood of RT #1 [49185, 53005] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49185-49940 bp Feature: domain Description: his_ut_repres Location: 49263-49935 bp Feature: domain Description: his_ut_repres Location: 4926 3-49935 bp Feature: gene Location: 50175-50747 bp Feature: domain Description: FIN Location: 50361-50712 bp Feature: domain Description: FIN Location: 5036 1-50712 bp Feature: gene Location: 51001-52350 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51466-52102 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5146 6 -52102 bp Feature: gene Location: 52323-52529 bp Feature: gene Location: 52676-53005 bp Feature: domain Description: Histone_HNS Location: 52697-52934 bp Feature: domain Description: Histone_HNS Location: 526 97-52934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)