myRT

myRT report for GCA_001992995.1_ASM199299v1

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Seq: MUVD01000011.1 Burkholderia cenocepacia strain VC5719 VC5719_contig-1, whole genome shotgun sequence (194453 bp)
Overview 1 RT 1: 49141-52890 bp Neighborhood of RT #1 [49141, 52961] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49141-49896 bp Feature: domain Description: his_ut_repres Location: 49219-49891 bp Feature: domain Description: his_ut_repres Location: 4921 9-49891 bp Feature: gene Location: 50131-50703 bp Feature: domain Description: FIN Location: 50317-50668 bp Feature: domain Description: FIN Location: 5031 7-50668 bp Feature: gene Location: 50957-52306 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51422-52058 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51 422-52058 bp Feature: gene Location: 52279-52485 bp Feature: gene Location: 52632-52961 bp Feature: domain Description: Histone_HNS Location: 52653-52890 bp Feature: domain Description: Histone_HNS Location: 52653-52890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUVD01000001.1 Burkholderia cenocepacia strain VC5719 VC5719_contig-0, whole genome shotgun sequence (55953 bp)
Overview 1 RT 1: 51254-55888 bp Neighborhood of RT #1 [51254, 55944] Gmd GDP_MD_SDR_e RVT-GII GIIM COG3547 Feature: gene Location: 51254-52300 bp Feature: domain Description: Gmd Location: 51269-52286 bp Feature: domain Description: Gmd Location: 512 69-52 2 86 bp Feature: gene Location: 52287-53252 bp Feature: domain Description: GDP_MD_SDR_e Location: 52323-53220 bp Feature: domain Description: GDP_MD_SDR_e Location: 52 32 3-532 2 0 bp Feature: gene Location: 53372-54739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53705-54320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53705-5432 0 bp Feature: domain Description: GIIM Note: maturase Location: 54380-54581 bp Feature: domain Description: GIIM Note: maturase Location: 54380-54581 bp Feature: gene Location: 54910-55944 bp Feature: domain Description: COG3547 Location: 54925-55888 bp Feature: domain Description: COG3547 Location: 5492 5-55888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUVD01000114.1 Burkholderia cenocepacia strain VC5719 VC5719_contig-9000008, whole genome shotgun sequence (102732 bp)
Overview 1 RT 1: 100397-102706 bp Neighborhood of RT #1 [100397, 102726] TnpB_IS66 RVT-GII PRK14702 Feature: gene Location: 100397-100729 bp Feature: domain Description: TnpB_IS66 Location: 100424-100712 bp Feature: domain Description: TnpB_IS66 Location: 100424-100712 bp Feature: gene Location: 100733-101055 bp Feature: gene Location: 101059-101994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101470-101986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101470-101986 bp Feature: gene Location: 102025-102726 bp Feature: domain Description: PRK14702 Location: 102028-102706 bp Feature: domain Description: PRK14702 Location: 102028-102706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, PRK14702 (insertion element IS2 transposase InsD; Provisional)

Seq: MUVD01000117.1 Burkholderia cenocepacia strain VC5719 VC5719_contig-12000008, whole genome shotgun sequence (59568 bp)
Overview 1 RT 1: 55208-58958 bp Neighborhood of RT #1 [55208, 59389] SRAP RVT-GII Feature: gene Location: 55208-56194 bp Feature: gene Location: 56890-57801 bp Feature: domain Description: SRAP Location: 57250-57766 bp Feature: domain Description: SRAP Location: 57250-57766 bp Feature: gene Location: 57857-59389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58268-58958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58268-58958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MUVD01000121.1 Burkholderia cenocepacia strain VC5719 VC5719_contig-3000009, whole genome shotgun sequence (89673 bp)
Overview 1 RT 1: 40526-45109 bp Neighborhood of RT #1 [40526, 45109] D RVT-GII Feature: gene Location: 40526-41596 bp Feature: domain Description: D Location: 40580-41564 bp Feature: domain Description: D Location: 405 80-415 64 bp Feature: gene Location: 41784-42080 bp Feature: gene Location: 42208-43740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42619-43309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42619-43309 bp Feature: gene Location: 44312-44731 bp Feature: gene Location: 44894-45109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MUVD01000108.1 Burkholderia cenocepacia strain VC5719 VC5719_contig-3000008, whole genome shotgun sequence (64253 bp)
Overview 1 RT 1: 10-7008 bp Neighborhood of RT #1 [10, 7055] COG3547 RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 10-1044 bp Feature: domain Description: COG3547 Location: 25-988 bp Feature: domain Description: COG3547 Location: 25-988 bp Feature: gene Location: 1215-2582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1548-2163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1548-216 3 bp Feature: domain Description: GIIM Note: maturase Location: 2223-2424 bp Feature: domain Description: GIIM Note: maturase Location: 2223-2424 bp Feature: gene Location: 2726-5188 bp Feature: domain Description: MscK Location: 2804-5147 bp Feature: domain Description: MscK Location: 2804-5147 bp Feature: gene Location: 5637-7055 bp Feature: domain Description: MFS_SV2_like Location: 5757-7008 bp Feature: domain Description: MFS_SV2_like Location: 5757-7008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)