myRT

myRT report for GCA_001993035.1_ASM199303v1

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Seq: MUVG01000055.1 Burkholderia cenocepacia strain VC7925 VC7925_contig-2000005, whole genome shotgun sequence (100245 bp)
Overview 1 RT 1: 97910-100219 bp Neighborhood of RT #1 [97910, 100239] TnpB_IS66 RVT-GII PRK14702 Feature: gene Location: 97910-98242 bp Feature: domain Description: TnpB_IS66 Location: 97937-98225 bp Feature: domain Description: TnpB_IS66 Location: 97937-98225 bp Feature: gene Location: 98246-98568 bp Feature: gene Location: 98572-99507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98983-99499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98983-99499 bp Feature: gene Location: 99538-100239 bp Feature: domain Description: PRK14702 Location: 99541-100219 bp Feature: domain Description: PRK1 4702 Location: 99541 -1 0021 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, PRK14702 (insertion element IS2 transposase InsD; Provisional)

Seq: MUVG01000104.1 Burkholderia cenocepacia strain VC7925 VC7925_contig-3000009, whole genome shotgun sequence (42939 bp)
Overview 1 RT 1: 22-2923 bp Neighborhood of RT #1 [22, 2923] RVT-GII Feature: gene Location: 22-1554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-112 3 bp Feature: gene Location: 2126-2545 bp Feature: gene Location: 2708-2923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MUVG01000022.1 Burkholderia cenocepacia strain VC7925 VC7925_contig-12000001, whole genome shotgun sequence (168985 bp)
Overview 1 RT 1: 49131-52880 bp Neighborhood of RT #1 [49131, 52951] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49131-49886 bp Feature: domain Description: his_ut_repres Location: 49209-49881 bp Feature: domain Description: his_ut_repres Location: 49209-49881 bp Feature: gene Location: 50121-50693 bp Feature: domain Description: FIN Location: 50307-50658 bp Feature: domain Description: FIN Location: 503 07-50658 bp Feature: gene Location: 50947-52296 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51412-52048 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51412-52048 bp Feature: gene Location: 52269-52475 bp Feature: gene Location: 52622-52951 bp Feature: domain Description: Histone_HNS Location: 52643-52880 bp Feature: domain Description: Histone_HNS Location: 52643 -52880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUVG01000171.1 Burkholderia cenocepacia strain VC7925 VC7925_contig-4000014, whole genome shotgun sequence (43655 bp)
Overview 1 RT 1: 40262-43045 bp Neighborhood of RT #1 [40262, 43476] D RVT-GII Feature: gene Location: 40262-41332 bp Feature: domain Description: D Location: 40316-41300 bp Feature: domain Description: D Location: 4 0316-4 1300 bp Feature: gene Location: 41520-41816 bp Feature: gene Location: 41944-43476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42355-43045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 2355-4 304 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MUVG01000061.1 Burkholderia cenocepacia strain VC7925 VC7925_contig-8000005, whole genome shotgun sequence (64636 bp)
Overview 1 RT 1: 7-7613 bp Neighborhood of RT #1 [7, 7660] COG3547 RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 7-306 bp Feature: gene Location: 615-1649 bp Feature: domain Description: COG3547 Location: 630-1593 bp Feature: domain Description: COG35 47 Location: 630-15 93 bp Feature: gene Location: 1820-3187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2153-2768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 215 3-2768 bp Feature: domain Description: GIIM Note: maturase Location: 2828-3029 bp Feature: domain Description: GIIM Note: maturase Location: 2828-3029 bp Feature: gene Location: 3331-5793 bp Feature: domain Description: MscK Location: 3409-5752 bp Feature: domain Description: MscK Location: 3409-5 75 2 bp Feature: gene Location: 6242-7660 bp Feature: domain Description: MFS_SV2_like Location: 6362-7613 bp Feature: domain Description: MFS_SV2_like Location: 6362-7613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MscK (COG3264), COG3547 (Transposase )

Seq: MUVG01000002.1 Burkholderia cenocepacia strain VC7925 VC7925_contig-1000000, whole genome shotgun sequence (54922 bp)
Overview 1 RT 1: 51272-54599 bp Neighborhood of RT #1 [51272, 54757] Gmd GDP_MD_SDR_e RVT-GII GIIM Feature: gene Location: 51272-52318 bp Feature: domain Description: Gmd Location: 51287-52304 bp Feature: domain Description: Gmd Location: 51287-52304 bp Feature: gene Location: 52305-53270 bp Feature: domain Description: GDP_MD_SDR_e Location: 52341-53238 bp Feature: domain Description: GDP_MD_SDR_e Location: 52341-53238 bp Feature: gene Location: 53390-54757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53723-54338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53723-54338 bp Feature: domain Description: GIIM Note: maturase Location: 54398-54599 bp Feature: domain Description: GIIM Note: maturase Location: 54398-54599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388)

Seq: MUVG01000062.1 Burkholderia cenocepacia strain VC7925 VC7925_contig-9000005, whole genome shotgun sequence (16283 bp)
Overview 1 RT 1: 10063-16283 bp Neighborhood of RT #1 [10063, 16283] PolY_like COG4544 RVT-GII SRAP Feature: gene Location: 10063-11541 bp Feature: domain Description: PolY_like Location: 10081-11068 bp Feature: domain Description: PolY_like Location: 10081-11068 bp Feature: gene Location: 11462-12178 bp Feature: domain Description: COG4544 Location: 11567-12002 bp Feature: domain Description: COG4544 Location: 11567 -12002 bp Feature: gene Location: 12579-14111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12990-13680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12990-13680 bp Feature: gene Location: 14167-15078 bp Feature: domain Description: SRAP Location: 14527-15043 bp Feature: domain Description: SRAP Location: 14527 -15043 bp Feature: gene Location: 15774-16283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII, SRAP (pfam02586)