myRT

myRT report for GCA_001993055.1_ASM199305v1

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Seq: MUUQ01000097.1 Burkholderia cenocepacia strain VC13124 VC13124_contig-9000006, whole genome shotgun sequence (6200 bp)
Overview 1 RT 1: 1-6198 bp Neighborhood of RT #1 [1, 6200] rve_3 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf COG3547 Feature: gene Location: 1-408 bp Ori: ONX46447.1 Feature: domain Description: rve_3 Location: 145-343 bp Feature: domain Description: rve_3 Location: 1 45-343 bp Feature: gene Location: 453-2108 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 885-2031 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 885-2031 bp Feature: gene Location: 2239-3309 bp Feature: domain Description: RVT_N Location: 2296-2533 bp Feature: domain Description: RVT_N Location: 2296-2533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2584-3235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2584-3235 bp Feature: gene Location: 3905-4960 bp Ori: ONX46448.1 Feature: domain Description: DEXHc_Snf Location: 4124-4379 bp Feature: domain Description: DEXHc_Snf Location: 41 24-4379 bp Feature: gene Location: 5295-6200 bp Ori: ONX46449.1 Feature: domain Description: COG3547 Location: 5319-6198 bp Feature: domain Description: COG3547 Location: 531 9-61 98 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, DEXHc_Snf (cd17919), COG3547 (Transposase )

Seq: MUUQ01000239.1 Burkholderia cenocepacia strain VC13124 VC13124_contig-17000014, whole genome shotgun sequence (46836 bp)
Overview 1 RT 1: 41442-46771 bp Neighborhood of RT #1 [41442, 46836] HATPase_c_3 RVT-UG5 rve_3 Feature: gene Location: 41442-42131 bp Feature: gene Location: 42383-44398 bp Ori: ONX34239.1 Feature: domain Description: HATPase_c_3 Location: 42452-42776 bp Feature: domain Description: HATPase_c_3 Location: 42 452 -42 776 bp Feature: gene Location: 44926-46380 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44935-45409 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44935-45409 bp Feature: gene Location: 46429-46836 bp Ori: ONX34243.1 Feature: domain Description: rve_3 Location: 46573-46771 bp Feature: domain Description: rve_3 Location: 46573-46771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, rve_3 (pfam13683)

Seq: MUUQ01000222.1 Burkholderia cenocepacia strain VC13124 VC13124_contig-19000013, whole genome shotgun sequence (115700 bp)
Overview 1 RT 1: 29121-33510 bp Neighborhood of RT #1 [29121, 33533] Dcm Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29121-29381 bp Feature: gene Location: 29396-31297 bp Ori: ONX35821.1 Feature: domain Description: Dcm Location: 29429-30035 bp Feature: domain Description: Dcm Location: 29429-3 003 5 bp Feature: domain Description: Dcm Location: 31034-31193 bp Feature: domain Description: Dcm Location: 3 103 4-3 1193 bp Feature: gene Location: 31356-32354 bp Ori: ONX35722.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31449-32136 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 1449-3 213 6 bp Feature: gene Location: 32698-33054 bp Ori: ONX35723.1 Feature: domain Description: Avd_like Location: 32725-33031 bp Feature: domain Description: Avd_like Location: 3 2725-3 3 03 1 bp Feature: gene Location: 33069-33533 bp Ori: ONX35724.1 Feature: domain Description: DUF1566 Location: 33330-33510 bp Feature: domain Description: DUF1566 Location: 3 3 3 3 0-3 3 510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: MUUQ01000085.1 Burkholderia cenocepacia strain VC13124 VC13124_contig-14000005, whole genome shotgun sequence (152504 bp)
Overview 1 RT 1: 112376-116984 bp Neighborhood of RT #1 [112376, 116992] COG3547 RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 112376-112570 bp Feature: gene Location: 112950-113984 bp Ori: ONX47784.1 Feature: domain Description: COG3547 Location: 112965-113928 bp Feature: domain Description: COG354 7 Location: 112965-113928 bp Feature: gene Location: 114155-115522 bp Ori: ONX47785.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114488-115103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114 4 88-115103 bp Feature: domain Description: GIIM Note: maturase Location: 115163-115364 bp Feature: domain Description: GIIM Note: maturase Location: 115163-115364 bp Feature: gene Location: 115630-116517 bp Ori: ONX47786.1 Feature: domain Description: RsmI Location: 115678-116491 bp Feature: domain Description: RsmI Location: 115678-1164 91 bp Feature: gene Location: 116516-116992 bp Ori: ONX47787.1 Feature: domain Description: PRK14673 Location: 116567-116984 bp Feature: domain Description: PRK14 673 Location: 116567-116984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)

Seq: MUUQ01000179.1 Burkholderia cenocepacia strain VC13124 VC13124_contig-4000011, whole genome shotgun sequence (27940 bp)
Overview 1 RT 1: 25822-27782 bp Neighborhood of RT #1 [25822, 27940] PRK12511 COG4315 RVT-GII GIIM Feature: gene Location: 25822-26337 bp Ori: ONX39857.1 Feature: domain Description: PRK12511 Location: 25834-26329 bp Feature: domain Description: PRK125 11 Location: 25 834-26329 bp Feature: gene Location: 26365-26724 bp Ori: ONX39858.1 Feature: domain Description: COG4315 Location: 26386-26722 bp Feature: domain Description: COG4315 Location: 26386-26722 bp Feature: gene Location: 27005-27940 bp Ori: ONX39859.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27011-27521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27011-275 21 bp Feature: domain Description: GIIM Note: maturase Location: 27581-27782 bp Feature: domain Description: GIIM Note: maturase Location: 275 81-27782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12511 (RNA polymerase sigma factor; Provisional), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), RVT-GII, GIIM (pfam08388)

Seq: MUUQ01000110.1 Burkholderia cenocepacia strain VC13124 VC13124_contig-6000007, whole genome shotgun sequence (112005 bp)
Overview 1 RT 1: 12322-16071 bp Neighborhood of RT #1 [12322, 16142] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 12322-13077 bp Ori: ONX44976.1 Feature: domain Description: his_ut_repres Location: 12400-13072 bp Feature: domain Description: his_ut_repres Location: 12400-13072 bp Feature: gene Location: 13312-13884 bp Ori: ONX44977.1 Feature: domain Description: FIN Location: 13498-13849 bp Feature: domain Description: FIN Location: 13498-13849 bp Feature: gene Location: 14138-15487 bp Ori: ONX44978.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14603-15239 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 146 03-15239 bp Feature: gene Location: 15460-15666 bp Feature: gene Location: 15813-16142 bp Ori: ONX44980.1 Feature: domain Description: Histone_HNS Location: 15834-16071 bp Feature: domain Description: Histone_HNS Location: 15834-16 071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)