myRT

myRT report for GCA_001993075.1_ASM199307v1

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Seq: MUUO01000072.1 Burkholderia cenocepacia strain VC11138 VC11138_contig-16000005, whole genome shotgun sequence (42005 bp)
Overview 1 RT 1: 1439-6047 bp Neighborhood of RT #1 [1439, 6055] COG3547 RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 1439-1633 bp Feature: gene Location: 2013-3047 bp Feature: domain Description: COG3547 Location: 2028-2991 bp Feature: domain Description: COG3547 Location: 2028-2991 bp Feature: gene Location: 3218-4585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3551-4166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3551 -41 66 bp Feature: domain Description: GIIM Note: maturase Location: 4226-4427 bp Feature: domain Description: GIIM Note: maturase Location: 4226-4427 bp Feature: gene Location: 4693-5580 bp Feature: domain Description: RsmI Location: 4741-5554 bp Feature: domain Description: RsmI Location: 4741 -5554 bp Feature: gene Location: 5579-6055 bp Feature: domain Description: PRK14673 Location: 5630-6047 bp Feature: domain Description: PRK1 4673 Location: 5630-6047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)

Seq: MUUO01000099.1 Burkholderia cenocepacia strain VC11138 VC11138_contig-3000008, whole genome shotgun sequence (29003 bp)
Overview 1 RT 1: 10-3757 bp Neighborhood of RT #1 [10, 3765] COG3547 RVT-GII GIIM COG4315 PRK12511 Feature: gene Location: 10-1044 bp Feature: domain Description: COG3547 Location: 25-988 bp Feature: domain Description: COG3547 Location: 2 5-988 bp Feature: gene Location: 1215-2582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1548-2163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1548-2 163 bp Feature: domain Description: GIIM Note: maturase Location: 2223-2424 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 2 3-2 42 4 bp Feature: gene Location: 2863-3222 bp Feature: domain Description: COG4315 Location: 2884-3220 bp Feature: domain Description: COG4315 Location: 2 884-32 2 0 bp Feature: gene Location: 3250-3765 bp Feature: domain Description: PRK12511 Location: 3262-3757 bp Feature: domain Description: PRK12 511 Location: 32 62 -3757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), PRK12511 (RNA polymerase sigma factor; Provisional)

Seq: MUUO01000175.1 Burkholderia cenocepacia strain VC11138 VC11138_contig-12000015, whole genome shotgun sequence (248032 bp)
Overview 1 RT 1: 1-7045 bp Neighborhood of RT #1 [1, 7092] DEDD_Tnp_IS110 DEXHc_Snf RVT_N RVT-GII DUF4158 DDE_Tnp_Tn3 GIIM HNHc Feature: gene Location: 1-179 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 28-178 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 28-178 bp Feature: gene Location: 514-1569 bp Feature: domain Description: DEXHc_Snf Location: 733-988 bp Feature: domain Description: DEXHc_Snf Location: 73 3 -988 bp Feature: gene Location: 2165-3235 bp Feature: RT Description: RVT_N Location: 2222-2459 bp Feature: RT Description: RVT_N Location: 2222-2459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2510-3161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2510-3 161 bp Feature: gene Location: 3366-6281 bp Feature: domain Description: DUF4158 Location: 3405-3870 bp Feature: domain Description: DUF4158 Location: 3 405-3 870 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5058-6204 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5058-6204 bp Feature: gene Location: 6427-7092 bp Feature: domain Description: GIIM Note: maturase Location: 6430-6655 bp Feature: domain Description: GIIM Note: maturase Location: 643 0-6655 bp Feature: domain Description: HNHc Note: nucleases Location: 6889-7045 bp Feature: domain Description: HNHc Note: nucleases Location: 6889-7045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), RVT_N (pfam13655), RVT-GII, DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), DEXHc_Snf (cd17919)

Seq: MUUO01000040.1 Burkholderia cenocepacia strain VC11138 VC11138_contig-2000003, whole genome shotgun sequence (141690 bp)
Overview 1 RT 1: 12322-16071 bp Neighborhood of RT #1 [12322, 16142] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 12322-13077 bp Feature: domain Description: his_ut_repres Location: 12400-13072 bp Feature: domain Description: his_ut_repres Location: 124 00-13072 bp Feature: gene Location: 13312-13884 bp Feature: domain Description: FIN Location: 13498-13849 bp Feature: domain Description: FIN Location: 134 98-1384 9 bp Feature: gene Location: 14138-15487 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14603-15239 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14 603-15239 bp Feature: gene Location: 15460-15666 bp Feature: gene Location: 15813-16142 bp Feature: domain Description: Histone_HNS Location: 15834-16071 bp Feature: domain Description: Histone_HNS Location: 15834 -16071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)