myRT

myRT report for GCA_001993095.1_ASM199309v1

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Seq: MUVL01000078.1 Burkholderia cenocepacia strain VC5402 VC5402_contig-1000006, whole genome shotgun sequence (84088 bp)
Overview 1 RT 1: 55538-63915 bp Neighborhood of RT #1 [55538, 64136] PRK05643 gyrB RVT-Retrons YjgR YjgR SIR2_2 Feature: gene Location: 55538-56644 bp Feature: domain Description: PRK05643 Location: 55550-56642 bp Feature: domain Description: PRK05643 Location: 55550-56642 bp Feature: gene Location: 56837-59311 bp Feature: domain Description: gyrB Location: 56867-59309 bp Feature: domain Description: gyrB Location: 56867-59309 bp Feature: gene Location: 59737-61488 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59872-60514 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59872-6051 4 bp Feature: gene Location: 61583-63304 bp Feature: domain Description: YjgR Location: 62066-62330 bp Feature: domain Description: YjgR Location: 62066-62330 bp Feature: domain Description: YjgR Location: 62825-63227 bp Feature: domain Description: YjgR Location: 62825-63227 bp Feature: gene Location: 63297-64136 bp Feature: domain Description: SIR2_2 Location: 63471-63915 bp Feature: domain Description: SIR2_2 Location: 63471 -6391 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05643 (DNA polymerase III subunit beta; Validated), gyrB (TIGR01059), RVT-Retrons, YjgR (COG0433), SIR2_2 (pfam13289)

Seq: MUVL01000153.1 Burkholderia cenocepacia strain VC5402 VC5402_contig-17000011, whole genome shotgun sequence (3285 bp)
Overview 1 RT 1: 1-3285 bp Neighborhood of RT #1 [1, 3285] RVT-GII GIIM Feature: gene Location: 1-1202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: domain Description: GIIM Note: maturase Location: 1009-1201 bp Feature: domain Description: GIIM Note: maturase Location: 1009-12 01 bp Feature: gene Location: 1273-1602 bp Feature: gene Location: 1732-3285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MUVL01000059.1 Burkholderia cenocepacia strain VC5402 VC5402_contig-9000004, whole genome shotgun sequence (27752 bp)
Overview 1 RT 1: 6474-11899 bp Neighborhood of RT #1 [6474, 11919] DLH GatA RVT-GII GIIM fadh2 YvlD Feature: gene Location: 6474-7166 bp Feature: domain Description: DLH Location: 6486-7164 bp Feature: domain Description: DLH Location: 6486-7164 bp Feature: gene Location: 7247-8725 bp Feature: domain Description: GatA Location: 7274-8702 bp Feature: domain Description: GatA Location: 7274-8702 bp Feature: gene Location: 8835-10232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9168-9786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9168-9786 bp Feature: domain Description: GIIM Note: maturase Location: 9837-10047 bp Feature: domain Description: GIIM Note: maturase Location: 983 7-10047 bp Feature: gene Location: 10705-11535 bp Feature: domain Description: fadh2 Location: 10723-11527 bp Feature: domain Description: fadh2 Location: 10723 -11527 bp Feature: gene Location: 11566-11919 bp Feature: domain Description: YvlD Location: 11569-11899 bp Feature: domain Description: YvlD Location: 11569-11899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fadh2 (TIGR00676), YvlD (COG1950), DLH (pfam01738), GatA (COG0154), RVT-GII, GIIM (pfam08388)

Seq: MUVL01000097.1 Burkholderia cenocepacia strain VC5402 VC5402_contig-2000007, whole genome shotgun sequence (255853 bp)
Overview 1 RT 1: 129906-133721 bp Neighborhood of RT #1 [129906, 133726] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 129906-130235 bp Feature: domain Description: Histone_HNS Location: 129927-130164 bp Feature: domain Description: Histone_HNS Location: 129927-130164 bp Feature: gene Location: 130382-130588 bp Feature: gene Location: 130561-131910 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 131026-131662 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 131026-131662 bp Feature: gene Location: 132164-132736 bp Feature: domain Description: FIN Location: 132350-132701 bp Feature: domain Description: FIN Location: 132350-132701 bp Feature: gene Location: 132971-133726 bp Feature: domain Description: his_ut_repres Location: 133049-133721 bp Feature: domain Description: his_ut_repres Location: 13304 9-133721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)