myRT

myRT report for GCA_001993115.1_ASM199311v1

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Seq: MUVP01000040.1 Burkholderia cenocepacia strain VC13755 VC13755_contig-9000003, whole genome shotgun sequence (184725 bp)
Overview 1 RT 1: 10-4686 bp Neighborhood of RT #1 [10, 4700] COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 10-1044 bp Ori: ONZ27437.1 Feature: domain Description: COG3547 Location: 25-988 bp Feature: domain Description: COG3547 Location: 25-988 bp Feature: gene Location: 1215-2582 bp Ori: ONZ27438.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1548-2163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 548-21 63 bp Feature: domain Description: GIIM Note: maturase Location: 2223-2424 bp Feature: domain Description: GIIM Note: maturase Location: 2223-2424 bp Feature: gene Location: 2702-3667 bp Ori: ONZ27439.1 Feature: domain Description: GDP_MD_SDR_e Location: 2738-3635 bp Feature: domain Description: GDP_MD_SDR_e Location: 2738-3635 bp Feature: gene Location: 3654-4700 bp Ori: ONZ27440.1 Feature: domain Description: Gmd Location: 3669-4686 bp Feature: domain Description: Gmd Location: 3669-4686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089)

Seq: MUVP01000052.1 Burkholderia cenocepacia strain VC13755 VC13755_contig-5, whole genome shotgun sequence (186715 bp)
Overview 1 RT 1: 161595-167238 bp Neighborhood of RT #1 [161595, 167273] FACL_FadD13-like AcrR RVT-GII Spo0J DUF932 Feature: gene Location: 161595-163160 bp Ori: ONZ25805.1 Feature: domain Description: FACL_FadD13-like Location: 161625-163110 bp Feature: domain Description: FACL_FadD13-like Location: 16162 5-163110 bp Feature: gene Location: 163384-164079 bp Ori: ONZ25806.1 Feature: domain Description: AcrR Location: 163408-163891 bp Feature: domain Description: AcrR Location: 163408-163891 bp Feature: gene Location: 164178-164393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164223-164388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1642 2 3-164388 bp Feature: gene Location: 164365-166383 bp Feature: domain Description: Spo0J Location: 164530-165406 bp Feature: domain Description: Spo0J Location: 164530-165406 bp Feature: gene Location: 166449-167273 bp Ori: ONZ25807.1 Feature: domain Description: DUF932 Location: 166557-167238 bp Feature: domain Description: DUF932 Location: 166557-1672 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FACL_FadD13-like (cd17631), AcrR (COG1309), RVT-GII, Spo0J (COG1475), DUF932 (pfam06067)

Seq: MUVP01000091.1 Burkholderia cenocepacia strain VC13755 VC13755_contig-1000009, whole genome shotgun sequence (71775 bp)
Overview 1 RT 1: 67225-70975 bp Neighborhood of RT #1 [67225, 71406] SRAP RVT-GII Feature: gene Location: 67225-68211 bp Feature: gene Location: 68907-69818 bp Ori: ONZ21080.1 Feature: domain Description: SRAP Location: 69267-69783 bp Feature: domain Description: SRAP Location: 69267-69783 bp Feature: gene Location: 69874-71406 bp Ori: ONZ21081.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70285-70975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70285-70975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MUVP01000128.1 Burkholderia cenocepacia strain VC13755 VC13755_contig-5000013, whole genome shotgun sequence (22046 bp)
Overview 1 RT 1: 17977-21594 bp Neighborhood of RT #1 [17977, 22025] PolY_like COG4544 RVT-GII Feature: gene Location: 17977-19455 bp Ori: ONZ15535.1 Feature: domain Description: PolY_like Location: 17995-18982 bp Feature: domain Description: PolY_like Location: 17995-18982 bp Feature: gene Location: 19376-20092 bp Ori: ONZ15536.1 Feature: domain Description: COG4544 Location: 19481-19916 bp Feature: domain Description: COG4 54 4 Location: 194 81-19916 bp Feature: gene Location: 20493-22025 bp Ori: ONZ15537.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20904-21594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20904 -21594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII

Seq: MUVP01000014.1 Burkholderia cenocepacia strain VC13755 VC13755_contig-4000001, whole genome shotgun sequence (63839 bp)
Overview 1 RT 1: 10-7008 bp Neighborhood of RT #1 [10, 7055] COG3547 RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 10-1044 bp Ori: ONZ31257.1 Feature: domain Description: COG3547 Location: 25-988 bp Feature: domain Description: COG35 47 Location: 25 -988 bp Feature: gene Location: 1215-2582 bp Ori: ONZ31258.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1548-2163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 48-2163 bp Feature: domain Description: GIIM Note: maturase Location: 2223-2424 bp Feature: domain Description: GIIM Note: maturase Location: 2223-2424 bp Feature: gene Location: 2726-5188 bp Ori: ONZ31259.1 Feature: domain Description: MscK Location: 2804-5147 bp Feature: domain Description: MscK Location: 2804-5 147 bp Feature: gene Location: 5637-7055 bp Ori: ONZ31260.1 Feature: domain Description: MFS_SV2_like Location: 5757-7008 bp Feature: domain Description: MFS_SV2_like Location: 5 75 7-7008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)

Seq: MUVP01000006.1 Burkholderia cenocepacia strain VC13755 VC13755_contig-5000000, whole genome shotgun sequence (61447 bp)
Overview 1 RT 1: 45190-49741 bp Neighborhood of RT #1 [45190, 49773] RVT-GII D Feature: gene Location: 45190-45405 bp Feature: gene Location: 45568-45987 bp Feature: gene Location: 46559-48091 bp Ori: ONZ32493.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46970-47660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46 970-476 6 0 bp Feature: gene Location: 48219-48515 bp Feature: gene Location: 48703-49773 bp Ori: ONZ32495.1 Feature: domain Description: D Location: 48757-49741 bp Feature: domain Description: D Location: 48757-49741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, D (PHA02561)

Seq: MUVP01000053.1 Burkholderia cenocepacia strain VC13755 VC13755_contig-1000005, whole genome shotgun sequence (168756 bp)
Overview 1 RT 1: 48904-52653 bp Neighborhood of RT #1 [48904, 52724] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 48904-49659 bp Ori: ONZ25450.1 Feature: domain Description: his_ut_repres Location: 48982-49654 bp Feature: domain Description: his_ut_repres Location: 48982-49654 bp Feature: gene Location: 49894-50466 bp Ori: ONZ25451.1 Feature: domain Description: FIN Location: 50080-50431 bp Feature: domain Description: FIN Location: 50080-50431 bp Feature: gene Location: 50720-52069 bp Ori: ONZ25452.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51185-51821 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51185-51821 bp Feature: gene Location: 52042-52248 bp Feature: gene Location: 52395-52724 bp Ori: ONZ25454.1 Feature: domain Description: Histone_HNS Location: 52416-52653 bp Feature: domain Description: Histone_HNS Location: 52416-52653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUVP01000020.1 Burkholderia cenocepacia strain VC13755 VC13755_contig-3000002, whole genome shotgun sequence (102002 bp)
Overview 1 RT 1: 391-3933 bp Neighborhood of RT #1 [391, 3950] PRK09183 PRK09409 RVT-GII TnpB_IS66 Feature: gene Location: 391-1164 bp Ori: ONZ30377.1 Feature: domain Description: PRK09183 Location: 394-1156 bp Feature: domain Description: PRK0918 3 Location: 394-1156 bp Feature: gene Location: 1435-2322 bp Ori: ONZ30378.1 Feature: domain Description: PRK09409 Location: 1438-2305 bp Feature: domain Description: PRK09409 Location: 1438 -2305 bp Feature: gene Location: 2353-3288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2764-3280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2764-328 0 bp Feature: gene Location: 3292-3614 bp Feature: gene Location: 3618-3950 bp Ori: ONZ30379.1 Feature: domain Description: TnpB_IS66 Location: 3645-3933 bp Feature: domain Description: TnpB_IS66 Location: 3645-3933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09183 (transposase/IS protein; Provisional), PRK09409 (IS2 transposase TnpB; Reviewed), RVT-GII, TnpB_IS66 (pfam05717)