myRT

myRT report for GCA_001993135.1_ASM199313v1

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Seq: MURR01000064.1 Burkholderia cenocepacia strain VC5748 VC5748_contig-3000007, whole genome shotgun sequence (32367 bp)
Overview 1 RT 1: 1-3344 bp Neighborhood of RT #1 [1, 3361] PRK09409 RVT-GII TnpB_IS66 Feature: gene Location: 1-575 bp Feature: gene Location: 846-1733 bp Feature: domain Description: PRK09409 Location: 849-1716 bp Feature: domain Description: PRK09409 Location: 849-1 71 6 bp Feature: gene Location: 1725-2699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2136-2655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 36-2655 bp Feature: gene Location: 2703-3025 bp Feature: gene Location: 3029-3361 bp Feature: domain Description: TnpB_IS66 Location: 3056-3344 bp Feature: domain Description: TnpB_IS66 Location: 3056-3344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TnpB_IS66 (pfam05717), PRK09409 (IS2 transposase TnpB; Reviewed)

Seq: MURR01000088.1 Burkholderia cenocepacia strain VC5748 VC5748_contig-4000010, whole genome shotgun sequence (202674 bp)
Overview 1 RT 1: 149914-153729 bp Neighborhood of RT #1 [149914, 153734] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 149914-150243 bp Feature: domain Description: Histone_HNS Location: 149935-150172 bp Feature: domain Description: Histone_HNS Location: 149935-150172 bp Feature: gene Location: 150390-150596 bp Feature: gene Location: 150569-151918 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 151034-151670 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 151034-151670 bp Feature: gene Location: 152172-152744 bp Feature: domain Description: FIN Location: 152358-152709 bp Feature: domain Description: FIN Location: 152 358-152 709 bp Feature: gene Location: 152979-153734 bp Feature: domain Description: his_ut_repres Location: 153057-153729 bp Feature: domain Description: his_ut_repres Location: 153057-15372 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MURR01000132.1 Burkholderia cenocepacia strain VC5748 VC5748_contig-3000015, whole genome shotgun sequence (88557 bp)
Overview 1 RT 1: 81217-85800 bp Neighborhood of RT #1 [81217, 85800] D RVT-GII Feature: gene Location: 81217-82287 bp Feature: domain Description: D Location: 81271-82255 bp Feature: domain Description: D Location: 81271-82255 bp Feature: gene Location: 82475-82771 bp Feature: gene Location: 82899-84431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83310-84000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 3 10-84000 bp Feature: gene Location: 85003-85422 bp Feature: gene Location: 85585-85800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MURR01000039.1 Burkholderia cenocepacia strain VC5748 VC5748_contig-11000003, whole genome shotgun sequence (78891 bp)
Overview 1 RT 1: 14255-21861 bp Neighborhood of RT #1 [14255, 21908] COG3547 RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 14255-14554 bp Feature: gene Location: 14863-15897 bp Feature: domain Description: COG3547 Location: 14878-15841 bp Feature: domain Description: COG354 7 Location: 14 878-1584 1 bp Feature: gene Location: 16068-17435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16401-17016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164 01-17016 bp Feature: domain Description: GIIM Note: maturase Location: 17076-17277 bp Feature: domain Description: GIIM Note: maturase Location: 17076-17277 bp Feature: gene Location: 17579-20041 bp Feature: domain Description: MscK Location: 17657-20000 bp Feature: domain Description: MscK Location: 17657-20000 bp Feature: gene Location: 20490-21908 bp Feature: domain Description: MFS_SV2_like Location: 20610-21861 bp Feature: domain Description: MFS_SV2_like Location: 20610-21861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)