myRT

myRT report for GCA_001993155.1_ASM199315v1

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Seq: MURU01000058.1 Burkholderia cenocepacia strain VC7232 VC7232_contig-3000006, whole genome shotgun sequence (164816 bp)
Overview 1 RT 1: 112025-115840 bp Neighborhood of RT #1 [112025, 115845] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 112025-112354 bp Feature: domain Description: Histone_HNS Location: 112046-112283 bp Feature: domain Description: Histone_HNS Location: 1 1 2046-1 1 2283 bp Feature: gene Location: 112501-112707 bp Feature: gene Location: 112680-114029 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113145-113781 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 31 45-1 1 3781 bp Feature: gene Location: 114283-114855 bp Feature: domain Description: FIN Location: 114469-114820 bp Feature: domain Description: FIN Location: 1 1 4469-1 1 4820 bp Feature: gene Location: 115090-115845 bp Feature: domain Description: his_ut_repres Location: 115168-115840 bp Feature: domain Description: his_ut_repres Location: 1 1 51 68-1 1 5840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MURU01000053.1 Burkholderia cenocepacia strain VC7232 VC7232_contig-7000005, whole genome shotgun sequence (262242 bp)
Overview 1 RT 1: 7-5291 bp Neighborhood of RT #1 [7, 5305] COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 7-306 bp Feature: gene Location: 615-1649 bp Feature: domain Description: COG3547 Location: 630-1593 bp Feature: domain Description: COG3547 Location: 630-1593 bp Feature: gene Location: 1820-3187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2153-2768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 153-2 768 bp Feature: domain Description: GIIM Note: maturase Location: 2828-3029 bp Feature: domain Description: GIIM Note: maturase Location: 2 82 8-302 9 bp Feature: gene Location: 3307-4272 bp Feature: domain Description: GDP_MD_SDR_e Location: 3343-4240 bp Feature: domain Description: GDP_MD_SDR_e Location: 3343-42 40 bp Feature: gene Location: 4259-5305 bp Feature: domain Description: Gmd Location: 4274-5291 bp Feature: domain Description: Gmd Location: 42 74-52 91 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089), COG3547 (Transposase )

Seq: MURU01000090.1 Burkholderia cenocepacia strain VC7232 VC7232_contig-2000011, whole genome shotgun sequence (135664 bp)
Overview 1 RT 1: 86516-91099 bp Neighborhood of RT #1 [86516, 91099] D RVT-GII Feature: gene Location: 86516-87586 bp Feature: domain Description: D Location: 86570-87554 bp Feature: domain Description: D Location: 86570-87554 bp Feature: gene Location: 87774-88070 bp Feature: gene Location: 88198-89730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88609-89299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88609-89299 bp Feature: gene Location: 90302-90721 bp Feature: gene Location: 90884-91099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MURU01000029.1 Burkholderia cenocepacia strain VC7232 VC7232_contig-14000002, whole genome shotgun sequence (64217 bp)
Overview 1 RT 1: 57163-64152 bp Neighborhood of RT #1 [57163, 64208] MFS_SV2_like MscK RVT-GII GIIM COG3547 Feature: gene Location: 57163-58581 bp Feature: domain Description: MFS_SV2_like Location: 57283-58534 bp Feature: domain Description: MFS_SV2_like Location: 57283-58534 bp Feature: gene Location: 59030-61492 bp Feature: domain Description: MscK Location: 59108-61451 bp Feature: domain Description: MscK Location: 59108-614 51 bp Feature: gene Location: 61636-63003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61969-62584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61969-62584 bp Feature: domain Description: GIIM Note: maturase Location: 62644-62845 bp Feature: domain Description: GIIM Note: maturase Location: 6264 4 -6284 5 bp Feature: gene Location: 63174-64208 bp Feature: domain Description: COG3547 Location: 63189-64152 bp Feature: domain Description: COG354 7 Location: 63189-64 152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_SV2_like (cd17316), MscK (COG3264), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MURU01000055.1 Burkholderia cenocepacia strain VC7232 VC7232_contig-6, whole genome shotgun sequence (59570 bp)
Overview 1 RT 1: 95-4274 bp Neighborhood of RT #1 [95, 4274] RVT-GII SRAP Feature: gene Location: 95-1627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506-1196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 06-1196 bp Feature: gene Location: 1683-2594 bp Feature: domain Description: SRAP Location: 2043-2559 bp Feature: domain Description: SRAP Location: 2043-25 5 9 bp Feature: gene Location: 3288-4274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MURU01000067.1 Burkholderia cenocepacia strain VC7232 VC7232_contig-3000007, whole genome shotgun sequence (33695 bp)
Overview 1 RT 1: 1118-4660 bp Neighborhood of RT #1 [1118, 4677] PRK09183 PRK09409 RVT-GII TnpB_IS66 Feature: gene Location: 1118-1891 bp Feature: domain Description: PRK09183 Location: 1121-1883 bp Feature: domain Description: PRK09183 Location: 1121-1883 bp Feature: gene Location: 2162-3049 bp Feature: domain Description: PRK09409 Location: 2165-3032 bp Feature: domain Description: PRK09409 Location: 216 5-3032 bp Feature: gene Location: 3041-4015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452-3971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452-3971 bp Feature: gene Location: 4019-4341 bp Feature: gene Location: 4345-4677 bp Feature: domain Description: TnpB_IS66 Location: 4372-4660 bp Feature: domain Description: TnpB_IS6 6 Location: 4372-46 6 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09183 (transposase/IS protein; Provisional), PRK09409 (IS2 transposase TnpB; Reviewed), RVT-GII, TnpB_IS66 (pfam05717)

Seq: MURU01000110.1 Burkholderia cenocepacia strain VC7232 VC7232_contig-3000013, whole genome shotgun sequence (22007 bp)
Overview 1 RT 1: 17964-21581 bp Neighborhood of RT #1 [17964, 22007] PolY_like COG4544 RVT-GII Feature: gene Location: 17964-19442 bp Feature: domain Description: PolY_like Location: 17982-18969 bp Feature: domain Description: PolY_like Location: 17 982-18969 bp Feature: gene Location: 19363-20079 bp Feature: domain Description: COG4544 Location: 19468-19903 bp Feature: domain Description: COG4544 Location: 19468-19903 bp Feature: gene Location: 20480-22007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20891-21581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20891-21581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII