myRT

myRT report for GCA_001993175.1_ASM199317v1

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Seq: MURX01000064.1 Burkholderia cenocepacia strain VC7580 VC7580_contig-1000005, whole genome shotgun sequence (70823 bp)
Overview 1 RT 1: 45934-52158 bp Neighborhood of RT #1 [45934, 52631] SRAP RVT-GII COG4544 PolY_like Feature: gene Location: 45934-46920 bp Feature: gene Location: 47616-48527 bp Feature: domain Description: SRAP Location: 47976-48492 bp Feature: domain Description: SRAP Location: 47976-48492 bp Feature: gene Location: 48583-50115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48994-49684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48994-49684 bp Feature: gene Location: 50516-51232 bp Feature: domain Description: COG4544 Location: 50621-51056 bp Feature: domain Description: COG4544 Location: 50621 -51 056 bp Feature: gene Location: 51153-52631 bp Feature: domain Description: PolY_like Location: 51171-52158 bp Feature: domain Description: PolY_like Location: 51 1 71 -521 58 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII, COG4544 (Uncharacterized conserved protein ), PolY_like (cd03468)

Seq: MURX01000084.1 Burkholderia cenocepacia strain VC7580 VC7580_contig-1000007, whole genome shotgun sequence (33758 bp)
Overview 1 RT 1: 1118-4660 bp Neighborhood of RT #1 [1118, 4677] PRK09183 PRK09409 RVT-GII TnpB_IS66 Feature: gene Location: 1118-1891 bp Feature: domain Description: PRK09183 Location: 1121-1883 bp Feature: domain Description: PRK09183 Location: 112 1-1883 bp Feature: gene Location: 2162-3049 bp Feature: domain Description: PRK09409 Location: 2165-3032 bp Feature: domain Description: PRK09409 Location: 2 165-3032 bp Feature: gene Location: 3041-4015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452-3971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452 -3971 bp Feature: gene Location: 4019-4341 bp Feature: gene Location: 4345-4677 bp Feature: domain Description: TnpB_IS66 Location: 4372-4660 bp Feature: domain Description: TnpB_IS66 Location: 4372 -4660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09183 (transposase/IS protein; Provisional), PRK09409 (IS2 transposase TnpB; Reviewed), RVT-GII, TnpB_IS66 (pfam05717)

Seq: MURX01000068.1 Burkholderia cenocepacia strain VC7580 VC7580_contig-5000005, whole genome shotgun sequence (14583 bp)
Overview 1 RT 1: 11275-14058 bp Neighborhood of RT #1 [11275, 14489] D RVT-GII Feature: gene Location: 11275-12345 bp Feature: domain Description: D Location: 11329-12313 bp Feature: domain Description: D Location: 113 29-123 13 bp Feature: gene Location: 12533-12829 bp Feature: gene Location: 12957-14489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13368-14058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 3 68-14058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MURX01000072.1 Burkholderia cenocepacia strain VC7580 VC7580_contig-9000005, whole genome shotgun sequence (269193 bp)
Overview 1 RT 1: 2240-7524 bp Neighborhood of RT #1 [2240, 7538] COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 2240-2539 bp Feature: gene Location: 2848-3882 bp Feature: domain Description: COG3547 Location: 2863-3826 bp Feature: domain Description: COG354 7 Location: 2863-3826 bp Feature: gene Location: 4053-5420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4386-5001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 386-5001 bp Feature: domain Description: GIIM Note: maturase Location: 5061-5262 bp Feature: domain Description: GIIM Note: maturase Location: 5061-5262 bp Feature: gene Location: 5540-6505 bp Feature: domain Description: GDP_MD_SDR_e Location: 5576-6473 bp Feature: domain Description: GDP_MD_SDR_e Location: 5576-64 73 bp Feature: gene Location: 6492-7538 bp Feature: domain Description: Gmd Location: 6507-7524 bp Feature: domain Description: Gmd Location: 6507-7524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089)

Seq: MURX01000063.1 Burkholderia cenocepacia strain VC7580 VC7580_contig-5, whole genome shotgun sequence (164944 bp)
Overview 1 RT 1: 49099-52848 bp Neighborhood of RT #1 [49099, 52919] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49099-49854 bp Feature: domain Description: his_ut_repres Location: 49177-49849 bp Feature: domain Description: his_ut_repres Location: 49177-49849 bp Feature: gene Location: 50089-50661 bp Feature: domain Description: FIN Location: 50275-50626 bp Feature: domain Description: FIN Location: 5 0275 -5 0626 bp Feature: gene Location: 50915-52264 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51380-52016 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5 1380-5 2016 bp Feature: gene Location: 52237-52443 bp Feature: gene Location: 52590-52919 bp Feature: domain Description: Histone_HNS Location: 52611-52848 bp Feature: domain Description: Histone_HNS Location: 5 2611-5 2848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MURX01000100.1 Burkholderia cenocepacia strain VC7580 VC7580_contig-2000008, whole genome shotgun sequence (62609 bp)
Overview 1 RT 1: 166-5959 bp Neighborhood of RT #1 [166, 6006] RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 166-1533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: gene Location: 1677-4139 bp Feature: domain Description: MscK Location: 1755-4098 bp Feature: domain Description: MscK Location: 1755-4098 bp Feature: gene Location: 4588-6006 bp Feature: domain Description: MFS_SV2_like Location: 4708-5959 bp Feature: domain Description: MFS_SV2_like Location: 4708-5959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)