myRT

myRT report for GCA_001993185.1_ASM199318v1

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Seq: MUWX01000054.1 Burkholderia cenocepacia strain VC7691 VC7691_contig-7000005, whole genome shotgun sequence (3274 bp)
Overview 1 RT 1: 7-3029 bp Neighborhood of RT #1 [7, 3187] COG3547 RVT-GII GIIM Feature: gene Location: 7-306 bp Feature: gene Location: 615-1649 bp Feature: domain Description: COG3547 Location: 630-1593 bp Feature: domain Description: COG3547 Location: 630-1 593 bp Feature: gene Location: 1820-3187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2153-2768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 53-2768 bp Feature: domain Description: GIIM Note: maturase Location: 2828-3029 bp Feature: domain Description: GIIM Note: maturase Location: 2828-3029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUWX01000036.1 Burkholderia cenocepacia strain VC7691 VC7691_contig-9000003, whole genome shotgun sequence (202774 bp)
Overview 1 RT 1: 149771-153586 bp Neighborhood of RT #1 [149771, 153591] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 149771-150100 bp Feature: domain Description: Histone_HNS Location: 149792-150029 bp Feature: domain Description: Histone_HNS Location: 149792 -15002 9 bp Feature: gene Location: 150247-150453 bp Feature: gene Location: 150426-151775 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 150891-151527 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 150891-15152 7 bp Feature: gene Location: 152029-152601 bp Feature: domain Description: FIN Location: 152215-152566 bp Feature: domain Description: FIN Location: 152 2 15-152 566 bp Feature: gene Location: 152836-153591 bp Feature: domain Description: his_ut_repres Location: 152914-153586 bp Feature: domain Description: his_ut_repres Location: 152 914-153586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUWX01000131.1 Burkholderia cenocepacia strain VC7691 VC7691_contig-12, whole genome shotgun sequence (183652 bp)
Overview 1 RT 1: 166-3637 bp Neighborhood of RT #1 [166, 3651] RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 166-1533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: domain Description: GIIM Note: maturase Location: 1174-13 75 bp Feature: gene Location: 1653-2618 bp Feature: domain Description: GDP_MD_SDR_e Location: 1689-2586 bp Feature: domain Description: GDP_MD_SDR_e Location: 1689-2586 bp Feature: gene Location: 2605-3651 bp Feature: domain Description: Gmd Location: 2620-3637 bp Feature: domain Description: Gmd Location: 2620-3 63 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388), Gmd (COG1089)

Seq: MUWX01000080.1 Burkholderia cenocepacia strain VC7691 VC7691_contig-1000008, whole genome shotgun sequence (62460 bp)
Overview 1 RT 1: 166-5959 bp Neighborhood of RT #1 [166, 6006] RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 166-1533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 99-1114 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: domain Description: GIIM Note: maturase Location: 1174 -1375 bp Feature: gene Location: 1677-4139 bp Feature: domain Description: MscK Location: 1755-4098 bp Feature: domain Description: MscK Location: 1755-4 098 bp Feature: gene Location: 4588-6006 bp Feature: domain Description: MFS_SV2_like Location: 4708-5959 bp Feature: domain Description: MFS_SV2_like Location: 4 708-5959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)

Seq: MUWX01000106.1 Burkholderia cenocepacia strain VC7691 VC7691_contig-6000010, whole genome shotgun sequence (21966 bp)
Overview 1 RT 1: 17923-21540 bp Neighborhood of RT #1 [17923, 21966] PolY_like COG4544 RVT-GII Feature: gene Location: 17923-19401 bp Feature: domain Description: PolY_like Location: 17941-18928 bp Feature: domain Description: PolY_like Location: 17941-18928 bp Feature: gene Location: 19322-20038 bp Feature: domain Description: COG4544 Location: 19427-19862 bp Feature: domain Description: COG45 44 Location: 19427-19862 bp Feature: gene Location: 20439-21966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20850-21540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2085 0-215 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII

Seq: MUWX01000050.1 Burkholderia cenocepacia strain VC7691 VC7691_contig-3000005, whole genome shotgun sequence (14583 bp)
Overview 1 RT 1: 11275-14058 bp Neighborhood of RT #1 [11275, 14489] D RVT-GII Feature: gene Location: 11275-12345 bp Feature: domain Description: D Location: 11329-12313 bp Feature: domain Description: D Location: 11329-12313 bp Feature: gene Location: 12533-12829 bp Feature: gene Location: 12957-14489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13368-14058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1336 8-14058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MUWX01000072.1 Burkholderia cenocepacia strain VC7691 VC7691_contig-7000007, whole genome shotgun sequence (33695 bp)
Overview 1 RT 1: 1118-4660 bp Neighborhood of RT #1 [1118, 4677] PRK09183 PRK09409 RVT-GII TnpB_IS66 Feature: gene Location: 1118-1891 bp Feature: domain Description: PRK09183 Location: 1121-1883 bp Feature: domain Description: PRK09183 Location: 1121-1883 bp Feature: gene Location: 2162-3049 bp Feature: domain Description: PRK09409 Location: 2165-3032 bp Feature: domain Description: PRK09409 Location: 2165-3032 bp Feature: gene Location: 3041-4015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452-3971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452-397 1 bp Feature: gene Location: 4019-4341 bp Feature: gene Location: 4345-4677 bp Feature: domain Description: TnpB_IS66 Location: 4372-4660 bp Feature: domain Description: TnpB_IS66 Location: 437 2-4660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09183 (transposase/IS protein; Provisional), PRK09409 (IS2 transposase TnpB; Reviewed), RVT-GII, TnpB_IS66 (pfam05717)

Seq: MUWX01000113.1 Burkholderia cenocepacia strain VC7691 VC7691_contig-11, whole genome shotgun sequence (71573 bp)
Overview 1 RT 1: 67298-71048 bp Neighborhood of RT #1 [67298, 71479] SRAP RVT-GII Feature: gene Location: 67298-68284 bp Feature: gene Location: 68980-69891 bp Feature: domain Description: SRAP Location: 69340-69856 bp Feature: domain Description: SRAP Location: 69340-698 56 bp Feature: gene Location: 69947-71479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70358-71048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70358 -71048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII