myRT

myRT report for GCA_001993215.1_ASM199321v1

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Seq: MUSE01000040.1 Burkholderia cenocepacia strain VC6916 VC6916_contig-5, whole genome shotgun sequence (127531 bp)
Overview 1 RT 1: 122532-127466 bp Neighborhood of RT #1 [122532, 127522] MFS_MMR_MDR_like AcrR RVT-GII GIIM COG3547 Feature: gene Location: 122532-124052 bp Feature: domain Description: MFS_MMR_MDR_like Location: 122574-123987 bp Feature: domain Description: MFS_MMR_MDR_like Location: 1 22574-1 23987 bp Feature: gene Location: 124198-124836 bp Feature: domain Description: AcrR Location: 124261-124822 bp Feature: domain Description: AcrR Location: 1 24261 -1 24822 bp Feature: gene Location: 124926-126323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125259-125877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 25259-1 25877 bp Feature: domain Description: GIIM Note: maturase Location: 125928-126138 bp Feature: domain Description: GIIM Note: maturase Location: 1 25928-1 261 38 bp Feature: gene Location: 126488-127522 bp Feature: domain Description: COG3547 Location: 126503-127466 bp Feature: domain Description: COG3547 Location: 1 26503-1 27466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MMR_MDR_like (cd17504), AcrR (COG1309), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUSE01000110.1 Burkholderia cenocepacia strain VC6916 VC6916_contig-3000014, whole genome shotgun sequence (123945 bp)
Overview 1 RT 1: 3702-9388 bp Neighborhood of RT #1 [3702, 9432] SnoaL_4 EthD EthD RVT-GII GIIM PRK06498 YeaK Feature: gene Location: 3702-4214 bp Feature: domain Description: SnoaL_4 Location: 3723-4092 bp Feature: domain Description: SnoaL_4 Location: 372 3-4092 bp Feature: gene Location: 4267-4983 bp Feature: domain Description: EthD Location: 4333-4519 bp Feature: domain Description: EthD Location: 4333-4519 bp Feature: domain Description: EthD Location: 4657-4930 bp Feature: domain Description: EthD Location: 4657-4930 bp Feature: gene Location: 5080-6321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5272-5890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 72 -5890 bp Feature: domain Description: GIIM Note: maturase Location: 5941-6145 bp Feature: domain Description: GIIM Note: maturase Location: 5941-6145 bp Feature: gene Location: 6921-8504 bp Feature: domain Description: PRK06498 Location: 6924-8502 bp Feature: domain Description: PRK06498 Location: 692 4-8502 bp Feature: gene Location: 8911-9432 bp Feature: domain Description: YeaK Location: 8932-9388 bp Feature: domain Description: YeaK Location: 8932 -9388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL_4 (pfam13577), EthD (pfam07110), RVT-GII, GIIM (pfam08388), PRK06498 (isocitrate lyase; Provisional), YeaK (cd04336)

Seq: MUSE01000054.1 Burkholderia cenocepacia strain VC6916 VC6916_contig-8, whole genome shotgun sequence (163801 bp)
Overview 1 RT 1: 125900-129715 bp Neighborhood of RT #1 [125900, 129720] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 125900-126229 bp Feature: domain Description: Histone_HNS Location: 125921-126158 bp Feature: domain Description: Histone_HNS Location: 125921-126158 bp Feature: gene Location: 126376-126582 bp Feature: gene Location: 126555-127904 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 127020-127656 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 127020-127656 bp Feature: gene Location: 128158-128730 bp Feature: domain Description: FIN Location: 128344-128695 bp Feature: domain Description: FIN Location: 1283 44-128695 bp Feature: gene Location: 128965-129720 bp Feature: domain Description: his_ut_repres Location: 129043-129715 bp Feature: domain Description: his_ut_repres Location: 129043 -129715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)