myRT

myRT report for GCA_001993235.1_ASM199323v1

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Seq: MUSH01000066.1 Burkholderia cenocepacia strain VC7379 VC7379_contig-1000007, whole genome shotgun sequence (123754 bp)
Overview 1 RT 1: 3731-9416 bp Neighborhood of RT #1 [3731, 9460] SnoaL_4 EthD EthD RVT-GII GIIM PRK06498 YeaK Feature: gene Location: 3731-4243 bp Feature: domain Description: SnoaL_4 Location: 3752-4121 bp Feature: domain Description: SnoaL_4 Location: 3752-41 21 bp Feature: gene Location: 4296-5012 bp Feature: domain Description: EthD Location: 4362-4548 bp Feature: domain Description: EthD Location: 4362-4548 bp Feature: domain Description: EthD Location: 4686-4959 bp Feature: domain Description: EthD Location: 4686-4959 bp Feature: gene Location: 5109-6350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5301-5919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5301 -591 9 bp Feature: domain Description: GIIM Note: maturase Location: 5970-6174 bp Feature: domain Description: GIIM Note: maturase Location: 5970-61 74 bp Feature: gene Location: 6949-8532 bp Feature: domain Description: PRK06498 Location: 6952-8530 bp Feature: domain Description: PRK06498 Location: 6952-8530 bp Feature: gene Location: 8939-9460 bp Feature: domain Description: YeaK Location: 8960-9416 bp Feature: domain Description: YeaK Location: 8960-941 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL_4 (pfam13577), EthD (pfam07110), RVT-GII, GIIM (pfam08388), PRK06498 (isocitrate lyase; Provisional), YeaK (cd04336)

Seq: MUSH01000025.1 Burkholderia cenocepacia strain VC7379 VC7379_contig-18000002, whole genome shotgun sequence (315214 bp)
Overview 1 RT 1: 34080-37829 bp Neighborhood of RT #1 [34080, 37900] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 34080-34835 bp Feature: domain Description: his_ut_repres Location: 34158-34830 bp Feature: domain Description: his_ut_repres Location: 34158-34830 bp Feature: gene Location: 35070-35642 bp Feature: domain Description: FIN Location: 35256-35607 bp Feature: domain Description: FIN Location: 352 56-35607 bp Feature: gene Location: 35896-37245 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36361-36997 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36361-36997 bp Feature: gene Location: 37218-37424 bp Feature: gene Location: 37571-37900 bp Feature: domain Description: Histone_HNS Location: 37592-37829 bp Feature: domain Description: Histone_HNS Location: 37592 -3782 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUSH01000130.1 Burkholderia cenocepacia strain VC7379 VC7379_contig-1000015, whole genome shotgun sequence (61710 bp)
Overview 1 RT 1: 1-4844 bp Neighborhood of RT #1 [1, 4909] COG3547 RVT-GII GIIM AcrR MFS_MMR_MDR_like Feature: gene Location: 1-953 bp Feature: domain Description: COG3547 Location: 16-949 bp Feature: domain Description: COG3 547 Location: 16-949 bp Feature: gene Location: 1118-2515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1451-2069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1451-2069 bp Feature: domain Description: GIIM Note: maturase Location: 2120-2330 bp Feature: domain Description: GIIM Note: maturase Location: 2120-23 3 0 bp Feature: gene Location: 2605-3243 bp Feature: domain Description: AcrR Location: 2668-3229 bp Feature: domain Description: AcrR Location: 2668-3 229 bp Feature: gene Location: 3389-4909 bp Feature: domain Description: MFS_MMR_MDR_like Location: 3431-4844 bp Feature: domain Description: MFS_MMR_MDR_like Location: 3 43 1-4844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), AcrR (COG1309), MFS_MMR_MDR_like (cd17504)