myRT

myRT report for GCA_001993255.1_ASM199325v1

Download annotations/find similar RTs

Seq: MUSJ01000056.1 Burkholderia cenocepacia strain VC8222 VC8222_contig-1000005, whole genome shotgun sequence (61790 bp)
Overview 1 RT 1: 56791-61725 bp Neighborhood of RT #1 [56791, 61781] MFS_MMR_MDR_like AcrR RVT-GII GIIM COG3547 Feature: gene Location: 56791-58311 bp Feature: domain Description: MFS_MMR_MDR_like Location: 56833-58246 bp Feature: domain Description: MFS_MMR_MDR_like Location: 56833-58246 bp Feature: gene Location: 58457-59095 bp Feature: domain Description: AcrR Location: 58520-59081 bp Feature: domain Description: AcrR Location: 58520-59081 bp Feature: gene Location: 59185-60582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59518-60136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5951 8-601 36 bp Feature: domain Description: GIIM Note: maturase Location: 60187-60397 bp Feature: domain Description: GIIM Note: maturase Location: 601 87-60397 bp Feature: gene Location: 60747-61781 bp Feature: domain Description: COG3547 Location: 60762-61725 bp Feature: domain Description: COG3547 Location: 60762-61 725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MMR_MDR_like (cd17504), AcrR (COG1309), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUSJ01000080.1 Burkholderia cenocepacia strain VC8222 VC8222_contig-3000007, whole genome shotgun sequence (19348 bp)
Overview 1 RT 1: 3712-9397 bp Neighborhood of RT #1 [3712, 9441] SnoaL_4 EthD EthD RVT-GII GIIM PRK06498 YeaK Feature: gene Location: 3712-4224 bp Feature: domain Description: SnoaL_4 Location: 3733-4102 bp Feature: domain Description: SnoaL_4 Location: 3733-4102 bp Feature: gene Location: 4277-4993 bp Feature: domain Description: EthD Location: 4343-4529 bp Feature: domain Description: EthD Location: 4343-452 9 bp Feature: domain Description: EthD Location: 4667-4940 bp Feature: domain Description: EthD Location: 4667-4940 bp Feature: gene Location: 5090-6331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5282-5900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 82 -5900 bp Feature: domain Description: GIIM Note: maturase Location: 5951-6155 bp Feature: domain Description: GIIM Note: maturase Location: 5951-6155 bp Feature: gene Location: 6930-8513 bp Feature: domain Description: PRK06498 Location: 6933-8511 bp Feature: domain Description: PRK06498 Location: 6933-8511 bp Feature: gene Location: 8920-9441 bp Feature: domain Description: YeaK Location: 8941-9397 bp Feature: domain Description: YeaK Location: 8941-9397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL_4 (pfam13577), EthD (pfam07110), RVT-GII, GIIM (pfam08388), PRK06498 (isocitrate lyase; Provisional), YeaK (cd04336)

Seq: MUSJ01000155.1 Burkholderia cenocepacia strain VC8222 VC8222_contig-12000013, whole genome shotgun sequence (164772 bp)
Overview 1 RT 1: 34080-37829 bp Neighborhood of RT #1 [34080, 37900] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 34080-34835 bp Feature: domain Description: his_ut_repres Location: 34158-34830 bp Feature: domain Description: his_ut_repres Location: 3 4158-3 483 0 bp Feature: gene Location: 35070-35642 bp Feature: domain Description: FIN Location: 35256-35607 bp Feature: domain Description: FIN Location: 3 5256-3 5607 bp Feature: gene Location: 35896-37245 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36361-36997 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 63 61-3 6997 bp Feature: gene Location: 37218-37424 bp Feature: gene Location: 37571-37900 bp Feature: domain Description: Histone_HNS Location: 37592-37829 bp Feature: domain Description: Histone_HNS Location: 3 7592-3 7829 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)