myRT

myRT report for GCA_001993275.1_ASM199327v1

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Seq: MUSK01000055.1 Burkholderia cenocepacia strain VC9970 VC9970_contig-8, whole genome shotgun sequence (164969 bp)
Overview 1 RT 1: 127036-130851 bp Neighborhood of RT #1 [127036, 130856] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 127036-127365 bp Feature: domain Description: Histone_HNS Location: 127057-127294 bp Feature: domain Description: Histone_HNS Location: 1 27057-1 27294 bp Feature: gene Location: 127512-127718 bp Feature: gene Location: 127691-129040 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 128156-128792 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 281 56-1 28792 bp Feature: gene Location: 129294-129866 bp Feature: domain Description: FIN Location: 129480-129831 bp Feature: domain Description: FIN Location: 1 29480-1 29831 bp Feature: gene Location: 130101-130856 bp Feature: domain Description: his_ut_repres Location: 130179-130851 bp Feature: domain Description: his_ut_repres Location: 1 301 79-1 30851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUSK01000105.1 Burkholderia cenocepacia strain VC9970 VC9970_contig-2000015, whole genome shotgun sequence (61673 bp)
Overview 1 RT 1: 1-4844 bp Neighborhood of RT #1 [1, 4909] COG3547 RVT-GII GIIM AcrR MFS_MMR_MDR_like Feature: gene Location: 1-953 bp Feature: domain Description: COG3547 Location: 16-949 bp Feature: domain Description: COG3547 Location: 16-949 bp Feature: gene Location: 1118-2515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1451-2069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1451-2 069 bp Feature: domain Description: GIIM Note: maturase Location: 2120-2330 bp Feature: domain Description: GIIM Note: maturase Location: 2 12 0-2 330 bp Feature: gene Location: 2605-3243 bp Feature: domain Description: AcrR Location: 2668-3229 bp Feature: domain Description: AcrR Location: 2 668-32 2 9 bp Feature: gene Location: 3389-4909 bp Feature: domain Description: MFS_MMR_MDR_like Location: 3431-4844 bp Feature: domain Description: MFS_MMR_MDR_like Location: 3431-4844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), AcrR (COG1309), MFS_MMR_MDR_like (cd17504)

Seq: MUSK01000064.1 Burkholderia cenocepacia strain VC9970 VC9970_contig-9, whole genome shotgun sequence (123890 bp)
Overview 1 RT 1: 114453-120062 bp Neighborhood of RT #1 [114453, 120184] YeaK PRK06498 RVT-GII GIIM EthD EthD SnoaL_4 Feature: gene Location: 114453-114974 bp Feature: domain Description: YeaK Location: 114474-114930 bp Feature: domain Description: YeaK Location: 114474-11493 0 bp Feature: gene Location: 115381-116964 bp Feature: domain Description: PRK06498 Location: 115384-116962 bp Feature: domain Description: PRK06498 Location: 1153 84-116962 bp Feature: gene Location: 117427-118806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117757-118375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117757-1183 75 bp Feature: domain Description: GIIM Note: maturase Location: 118426-118630 bp Feature: domain Description: GIIM Note: maturase Location: 118426-11863 0 bp Feature: gene Location: 118903-119619 bp Feature: domain Description: EthD Location: 118969-119155 bp Feature: domain Description: EthD Location: 118969-119155 bp Feature: domain Description: EthD Location: 119293-119566 bp Feature: domain Description: EthD Location: 119293 -119566 bp Feature: gene Location: 119672-120184 bp Feature: domain Description: SnoaL_4 Location: 119693-120062 bp Feature: domain Description: SnoaL_4 Location: 119693 -120062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeaK (cd04336), PRK06498 (isocitrate lyase; Provisional), RVT-GII, GIIM (pfam08388), EthD (pfam07110), SnoaL_4 (pfam13577)