myRT

myRT report for GCA_001993315.1_ASM199331v1

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Seq: MUVO01000138.1 Burkholderia cenocepacia strain VC13356 VC13356_contig-11000013, whole genome shotgun sequence (48109 bp)
Overview 1 RT 1: 45187-47657 bp Neighborhood of RT #1 [45187, 48088] RVT-GII Feature: gene Location: 45187-45402 bp Feature: gene Location: 45565-45984 bp Feature: gene Location: 46556-48088 bp Ori: ONY94283.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46967-47657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46967-47657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MUVO01000073.1 Burkholderia cenocepacia strain VC13356 VC13356_contig-6000008, whole genome shotgun sequence (62375 bp)
Overview 1 RT 1: 27-5496 bp Neighborhood of RT #1 [27, 5543] RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 27-1070 bp Ori: ONZ02330.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36-651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36-651 bp Feature: domain Description: GIIM Note: maturase Location: 711-912 bp Feature: domain Description: GIIM Note: maturase Location: 711-912 bp Feature: gene Location: 1214-3676 bp Ori: ONZ02331.1 Feature: domain Description: MscK Location: 1292-3635 bp Feature: domain Description: MscK Location: 12 92 -3635 bp Feature: gene Location: 4125-5543 bp Ori: ONZ02332.1 Feature: domain Description: MFS_SV2_like Location: 4245-5496 bp Feature: domain Description: MFS_SV2 _like Location: 42 45-5496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)

Seq: MUVO01000102.1 Burkholderia cenocepacia strain VC13356 VC13356_contig-10000010, whole genome shotgun sequence (27621 bp)
Overview 1 RT 1: 11671-16928 bp Neighborhood of RT #1 [11671, 17401] D RVT-GII COG4544 PolY_like Feature: gene Location: 11671-12741 bp Ori: ONY99047.1 Feature: domain Description: D Location: 11725-12709 bp Feature: domain Description: D Location: 11725-12709 bp Feature: gene Location: 12929-13225 bp Feature: gene Location: 13353-14885 bp Ori: ONY99049.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13764-14454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 764-14454 bp Feature: gene Location: 15286-16002 bp Ori: ONY99050.1 Feature: domain Description: COG4544 Location: 15391-15826 bp Feature: domain Description: COG4544 Location: 153 91-15826 bp Feature: gene Location: 15923-17401 bp Ori: ONY99051.1 Feature: domain Description: PolY_like Location: 15941-16928 bp Feature: domain Description: PolY_like Location: 15941-16928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII, COG4544 (Uncharacterized conserved protein ), PolY_like (cd03468)

Seq: MUVO01000136.1 Burkholderia cenocepacia strain VC13356 VC13356_contig-9000013, whole genome shotgun sequence (168985 bp)
Overview 1 RT 1: 116035-119850 bp Neighborhood of RT #1 [116035, 119855] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 116035-116364 bp Ori: ONY94587.1 Feature: domain Description: Histone_HNS Location: 116056-116293 bp Feature: domain Description: Histone_HNS Location: 116056-116293 bp Feature: gene Location: 116511-116717 bp Feature: gene Location: 116690-118039 bp Ori: ONY94589.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 117155-117791 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 117155-117791 bp Feature: gene Location: 118293-118865 bp Ori: ONY94590.1 Feature: domain Description: FIN Location: 118479-118830 bp Feature: domain Description: FIN Location: 1184 79-118830 bp Feature: gene Location: 119100-119855 bp Ori: ONY94591.1 Feature: domain Description: his_ut_repres Location: 119178-119850 bp Feature: domain Description: his_ut_repres Location: 119178-119850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUVO01000020.1 Burkholderia cenocepacia strain VC13356 VC13356_contig-3000002, whole genome shotgun sequence (186638 bp)
Overview 1 RT 1: 161820-167463 bp Neighborhood of RT #1 [161820, 167498] FACL_FadD13-like AcrR RVT-GII Spo0J DUF932 Feature: gene Location: 161820-163385 bp Ori: ONZ09924.1 Feature: domain Description: FACL_FadD13-like Location: 161850-163335 bp Feature: domain Description: FACL_FadD13-like Location: 16185 0-163335 bp Feature: gene Location: 163609-164304 bp Ori: ONZ09925.1 Feature: domain Description: AcrR Location: 163633-164116 bp Feature: domain Description: AcrR Location: 163633-164116 bp Feature: gene Location: 164403-164618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164448-164613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164448-164613 bp Feature: gene Location: 164590-166608 bp Feature: domain Description: Spo0J Location: 164755-165631 bp Feature: domain Description: Spo0J Location: 16475 5 -165 631 bp Feature: gene Location: 166674-167498 bp Ori: ONZ09926.1 Feature: domain Description: DUF932 Location: 166782-167463 bp Feature: domain Description: DUF932 Location: 166782-167463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FACL_FadD13-like (cd17631), AcrR (COG1309), RVT-GII, Spo0J (COG1475), DUF932 (pfam06067)

Seq: MUVO01000112.1 Burkholderia cenocepacia strain VC13356 VC13356_contig-12, whole genome shotgun sequence (183144 bp)
Overview 1 RT 1: 179957-182960 bp Neighborhood of RT #1 [179957, 183118] Gmd GDP_MD_SDR_e RVT-GII GIIM Feature: gene Location: 179957-181003 bp Ori: ONY97822.1 Feature: domain Description: Gmd Location: 179972-180989 bp Feature: domain Description: Gmd Location: 179972-180989 bp Feature: gene Location: 180990-181955 bp Ori: ONY97823.1 Feature: domain Description: GDP_MD_SDR_e Location: 181026-181923 bp Feature: domain Description: GDP_MD_SDR_e Location: 181026 -181923 bp Feature: gene Location: 182075-183118 bp Ori: ONY97824.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182084-182699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182084-1826 99 bp Feature: domain Description: GIIM Note: maturase Location: 182759-182960 bp Feature: domain Description: GIIM Note: maturase Location: 182759-18296 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388)

Seq: MUVO01000028.1 Burkholderia cenocepacia strain VC13356 VC13356_contig-5000003, whole genome shotgun sequence (30350 bp)
Overview 1 RT 1: 27083-30105 bp Neighborhood of RT #1 [27083, 30263] COG3547 RVT-GII GIIM Feature: gene Location: 27083-27382 bp Feature: gene Location: 27691-28725 bp Ori: ONZ08678.1 Feature: domain Description: COG3547 Location: 27706-28669 bp Feature: domain Description: COG3547 Location: 27 7 06-28669 bp Feature: gene Location: 28896-30263 bp Ori: ONZ08679.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29229-29844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29229-29844 bp Feature: domain Description: GIIM Note: maturase Location: 29904-30105 bp Feature: domain Description: GIIM Note: maturase Location: 29904-30105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: MUVO01000035.1 Burkholderia cenocepacia strain VC13356 VC13356_contig-2000004, whole genome shotgun sequence (247699 bp)
Overview 1 RT 1: 194749-198564 bp Neighborhood of RT #1 [194749, 198569] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 194749-195078 bp Ori: ONZ07549.1 Feature: domain Description: Histone_HNS Location: 194770-195007 bp Feature: domain Description: Histone_HNS Location: 194770-195007 bp Feature: gene Location: 195225-195431 bp Feature: gene Location: 195404-196753 bp Ori: ONZ07551.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 195869-196505 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1958 69-196505 bp Feature: gene Location: 197007-197579 bp Ori: ONZ07552.1 Feature: domain Description: FIN Location: 197193-197544 bp Feature: domain Description: FIN Location: 197193-197544 bp Feature: gene Location: 197814-198569 bp Ori: ONZ07553.1 Feature: domain Description: his_ut_repres Location: 197892-198564 bp Feature: domain Description: his_ut_repres Location: 1978 92-198 564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUVO01000067.1 Burkholderia cenocepacia strain VC13356 VC13356_contig-8, whole genome shotgun sequence (71777 bp)
Overview 1 RT 1: 370-4551 bp Neighborhood of RT #1 [370, 4551] RVT-GII SRAP Feature: gene Location: 370-1902 bp Ori: ONZ03365.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781-1471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781-1471 bp Feature: gene Location: 1958-2869 bp Ori: ONZ03366.1 Feature: domain Description: SRAP Location: 2318-2834 bp Feature: domain Description: SRAP Location: 2318-2834 bp Feature: gene Location: 3565-4551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SRAP (pfam02586)

Seq: MUVO01000018.1 Burkholderia cenocepacia strain VC13356 VC13356_contig-1000002, whole genome shotgun sequence (100090 bp)
Overview 1 RT 1: 1-2079 bp Neighborhood of RT #1 [1, 2096] PRK14702 RVT-GII TnpB_IS66 Feature: gene Location: 1-468 bp Ori: ONZ10259.1 Feature: domain Description: PRK14702 Location: 4-451 bp Feature: domain Description: PRK14702 Location: 4-451 bp Feature: gene Location: 499-1434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 910-1426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 910 -1426 bp Feature: gene Location: 1438-1760 bp Feature: gene Location: 1764-2096 bp Ori: ONZ10260.1 Feature: domain Description: TnpB_IS66 Location: 1791-2079 bp Feature: domain Description: TnpB_IS66 Location: 1791-2079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14702 (insertion element IS2 transposase InsD; Provisional), RVT-GII, TnpB_IS66 (pfam05717)