myRT

myRT report for GCA_001993355.1_ASM199335v1

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Seq: MUSS01000040.1 Burkholderia cenocepacia strain VC6072 VC6072_contig-4000005, whole genome shotgun sequence (267076 bp)
Overview 1 RT 1: 251278-255093 bp Neighborhood of RT #1 [251278, 255098] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 251278-251607 bp Ori: ONT47434.1 Feature: domain Description: Histone_HNS Location: 251299-251536 bp Feature: domain Description: Histone_HNS Location: 251 299-251 536 bp Feature: gene Location: 251754-251960 bp Feature: gene Location: 251933-253282 bp Ori: ONT47436.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 252398-253034 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 252398-253034 bp Feature: gene Location: 253536-254108 bp Ori: ONT47437.1 Feature: domain Description: FIN Location: 253722-254073 bp Feature: domain Description: FIN Location: 253722-254073 bp Feature: gene Location: 254343-255098 bp Ori: ONT47438.1 Feature: domain Description: his_ut_repres Location: 254421-255093 bp Feature: domain Description: his_ut_repres Location: 254421 -255093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUSS01000046.1 Burkholderia cenocepacia strain VC6072 VC6072_contig-10000005, whole genome shotgun sequence (48193 bp)
Overview 1 RT 1: 8065-12673 bp Neighborhood of RT #1 [8065, 12681] COG3547 RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 8065-8259 bp Feature: gene Location: 8639-9673 bp Ori: ONT46630.1 Feature: domain Description: COG3547 Location: 8654-9617 bp Feature: domain Description: COG3547 Location: 8654-9617 bp Feature: gene Location: 9844-11211 bp Ori: ONT46631.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10177-10792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10177-10792 bp Feature: domain Description: GIIM Note: maturase Location: 10852-11053 bp Feature: domain Description: GIIM Note: maturase Location: 10852 -11053 bp Feature: gene Location: 11319-12206 bp Ori: ONT46632.1 Feature: domain Description: RsmI Location: 11367-12180 bp Feature: domain Description: RsmI Location: 11367-12 180 bp Feature: gene Location: 12205-12681 bp Ori: ONT46633.1 Feature: domain Description: PRK14673 Location: 12256-12673 bp Feature: domain Description: PRK14673 Location: 12 2 56-12 673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)

Seq: MUSS01000103.1 Burkholderia cenocepacia strain VC6072 VC6072_contig-13, whole genome shotgun sequence (249556 bp)
Overview 1 RT 1: 22-7853 bp Neighborhood of RT #1 [22, 7900] COG3547 DEXHc_Snf RVT_N RVT-GII DUF4158 DDE_Tnp_Tn3 GIIM HNHc Feature: gene Location: 22-987 bp Ori: ONT36776.1 Feature: domain Description: COG3547 Location: 46-982 bp Feature: domain Description: COG3 547 Location: 46-982 bp Feature: gene Location: 1322-2377 bp Ori: ONT36777.1 Feature: domain Description: DEXHc_Snf Location: 1541-1796 bp Feature: domain Description: DEXHc_Snf Location: 1541-1796 bp Feature: gene Location: 2973-4043 bp Feature: domain Description: RVT_N Location: 3030-3267 bp Feature: domain Description: RVT_N Location: 3 03 0-3 267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3318-3969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 18-3 969 bp Feature: gene Location: 4174-7089 bp Ori: ONT36778.1 Feature: domain Description: DUF4158 Location: 4213-4678 bp Feature: domain Description: DUF4158 Location: 4213 -4678 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5866-7012 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5866-7012 bp Feature: gene Location: 7235-7900 bp Feature: domain Description: GIIM Note: maturase Location: 7238-7463 bp Feature: domain Description: GIIM Note: maturase Location: 723 8-7463 bp Feature: domain Description: HNHc Note: nucleases Location: 7697-7853 bp Feature: domain Description: HNHc Note: nucleases Location: 7697-7853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), GIIM (pfam08388), HNHc (smart00507)

Seq: MUSS01000114.1 Burkholderia cenocepacia strain VC6072 VC6072_contig-4000014, whole genome shotgun sequence (111378 bp)
Overview 1 RT 1: 105984-111313 bp Neighborhood of RT #1 [105984, 111378] HATPase_c_3 RVT-UG5 rve_3 Feature: gene Location: 105984-106673 bp Feature: gene Location: 106925-108940 bp Ori: ONT35025.1 Feature: domain Description: HATPase_c_3 Location: 106994-107318 bp Feature: domain Description: HATPase_c_3 Location: 106994 -107318 bp Feature: gene Location: 109468-110922 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 109477-109951 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1094 77-109951 bp Feature: gene Location: 110971-111378 bp Ori: ONT35032.1 Feature: domain Description: rve_3 Location: 111115-111313 bp Feature: domain Description: rve_3 Location: 111115-111313 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, rve_3 (pfam13683)

Seq: MUSS01000002.1 Burkholderia cenocepacia strain VC6072 VC6072_contig-1000000, whole genome shotgun sequence (143333 bp)
Overview 1 RT 1: 29121-33510 bp Neighborhood of RT #1 [29121, 33533] Dcm Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29121-29381 bp Feature: gene Location: 29396-31297 bp Ori: ONT54039.1 Feature: domain Description: Dcm Location: 29429-30035 bp Feature: domain Description: Dcm Location: 29429-30035 bp Feature: domain Description: Dcm Location: 31034-31193 bp Feature: domain Description: Dcm Location: 31034-31193 bp Feature: gene Location: 31356-32354 bp Ori: ONT53926.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31449-32136 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31449-32136 bp Feature: gene Location: 32698-33054 bp Ori: ONT53927.1 Feature: domain Description: Avd_like Location: 32725-33031 bp Feature: domain Description: Avd_like Location: 32725 -33031 bp Feature: gene Location: 33069-33533 bp Ori: ONT53928.1 Feature: domain Description: DUF1566 Location: 33330-33510 bp Feature: domain Description: DUF15 66 Location: 33330-335 10 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)