myRT

myRT report for GCA_001993395.1_ASM199339v1

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Seq: MUSY01000134.1 Burkholderia cenocepacia strain VC10526 VC10526_contig-1000013, whole genome shotgun sequence (71260 bp)
Overview 1 RT 1: 38061-42473 bp Neighborhood of RT #1 [38061, 42473] DUF1566 Avd_like RVT-DGRs Dcm Dcm Feature: gene Location: 38061-38525 bp Ori: ONU28635.1 Feature: domain Description: DUF1566 Location: 38322-38502 bp Feature: domain Description: DUF1 566 Location: 38322-38502 bp Feature: gene Location: 38540-38896 bp Ori: ONU28636.1 Feature: domain Description: Avd_like Location: 38567-38873 bp Feature: domain Description: Avd_like Location: 38567-38873 bp Feature: gene Location: 39240-40238 bp Ori: ONU28637.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 39333-40020 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 39333-40020 bp Feature: gene Location: 40297-42198 bp Ori: ONU28677.1 Feature: domain Description: Dcm Location: 40330-40936 bp Feature: domain Description: Dcm Location: 40330-40936 bp Feature: domain Description: Dcm Location: 41935-42094 bp Feature: domain Description: Dcm Location: 41 935-42094 bp Feature: gene Location: 42213-42473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, Dcm (COG0270)

Seq: MUSY01000092.1 Burkholderia cenocepacia strain VC10526 VC10526_contig-3000009, whole genome shotgun sequence (47144 bp)
Overview 1 RT 1: 1-5718 bp Neighborhood of RT #1 [1, 5718] HTH_21 rve HTH_Tnp_1 RVT-UG5 HATPase_c_3 Feature: gene Location: 1-426 bp Ori: ONU33360.1 Feature: domain Description: HTH_21 Location: 109-274 bp Feature: domain Description: HTH_2 1 Location: 109-2 74 bp Feature: domain Description: rve Location: 319-421 bp Feature: domain Description: rve Location: 319-42 1 bp Feature: gene Location: 450-713 bp Ori: ONU33323.1 Feature: domain Description: HTH_Tnp_1 Location: 456-660 bp Feature: domain Description: HTH_Tnp_1 Location: 456-660 bp Feature: gene Location: 780-2234 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 789-1263 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 789-12 63 bp Feature: gene Location: 2762-4777 bp Ori: ONU33324.1 Feature: domain Description: HATPase_c_3 Location: 2831-3155 bp Feature: domain Description: HATPase_c_3 Location: 2 831-3155 bp Feature: gene Location: 5029-5718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_21 (pfam13276), rve (pfam00665), HTH_Tnp_1 (pfam01527), RVT-UG5, HATPase_c_3 (pfam13589)

Seq: MUSY01000130.1 Burkholderia cenocepacia strain VC10526 VC10526_contig-10000012, whole genome shotgun sequence (144833 bp)
Overview 1 RT 1: 129528-133343 bp Neighborhood of RT #1 [129528, 133348] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 129528-129857 bp Ori: ONU29154.1 Feature: domain Description: Histone_HNS Location: 129549-129786 bp Feature: domain Description: Histone_HNS Location: 129549-129786 bp Feature: gene Location: 130004-130210 bp Feature: gene Location: 130183-131532 bp Ori: ONU29156.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 130648-131284 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13 0648-13 1284 bp Feature: gene Location: 131786-132358 bp Ori: ONU29157.1 Feature: domain Description: FIN Location: 131972-132323 bp Feature: domain Description: FIN Location: 13 1972-13 23 23 bp Feature: gene Location: 132593-133348 bp Ori: ONU29158.1 Feature: domain Description: his_ut_repres Location: 132671-133343 bp Feature: domain Description: his_ut_repres Location: 13 2671-13 3 3 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUSY01000061.1 Burkholderia cenocepacia strain VC10526 VC10526_contig-7000005, whole genome shotgun sequence (43105 bp)
Overview 1 RT 1: 2977-7585 bp Neighborhood of RT #1 [2977, 7593] COG3547 RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 2977-3171 bp Feature: gene Location: 3551-4585 bp Ori: ONU39005.1 Feature: domain Description: COG3547 Location: 3566-4529 bp Feature: domain Description: COG354 7 Location: 3566-4 529 bp Feature: gene Location: 4756-6123 bp Ori: ONU39006.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5089-5704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5089-5704 bp Feature: domain Description: GIIM Note: maturase Location: 5764-5965 bp Feature: domain Description: GIIM Note: maturase Location: 5764 -5965 bp Feature: gene Location: 6231-7118 bp Ori: ONU39007.1 Feature: domain Description: RsmI Location: 6279-7092 bp Feature: domain Description: RsmI Location: 6279-7092 bp Feature: gene Location: 7117-7593 bp Ori: ONU39008.1 Feature: domain Description: PRK14673 Location: 7168-7585 bp Feature: domain Description: PRK14 673 Location: 7168-7585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)

Seq: MUSY01000078.1 Burkholderia cenocepacia strain VC10526 VC10526_contig-8, whole genome shotgun sequence (163613 bp)
Overview 1 RT 1: 147472-151287 bp Neighborhood of RT #1 [147472, 151292] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 147472-147801 bp Ori: ONU35735.1 Feature: domain Description: Histone_HNS Location: 147493-147730 bp Feature: domain Description: Histone_HNS Location: 147493-147730 bp Feature: gene Location: 147948-148154 bp Feature: gene Location: 148127-149476 bp Ori: ONU35737.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 148592-149228 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1485 92-149228 bp Feature: gene Location: 149730-150302 bp Ori: ONU35738.1 Feature: domain Description: FIN Location: 149916-150267 bp Feature: domain Description: FIN Location: 149916-15 0267 bp Feature: gene Location: 150537-151292 bp Ori: ONU35739.1 Feature: domain Description: his_ut_repres Location: 150615-151287 bp Feature: domain Description: his_ut_repres Location: 15 0615 -15 1287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUSY01000022.1 Burkholderia cenocepacia strain VC10526 VC10526_contig-6000001, whole genome shotgun sequence (115725 bp)
Overview 1 RT 1: 1-7225 bp Neighborhood of RT #1 [1, 7272] COG3547 DEXHc_Snf RVT_N RVT-GII DUF4158 DDE_Tnp_Tn3 GIIM HNHc Feature: gene Location: 1-359 bp Ori: ONU45731.1 Feature: domain Description: COG3547 Location: 25-334 bp Feature: domain Description: COG3547 Location: 25-334 bp Feature: gene Location: 694-1749 bp Ori: ONU45617.1 Feature: domain Description: DEXHc_Snf Location: 913-1168 bp Feature: domain Description: DEXHc_Snf Location: 913-116 8 bp Feature: gene Location: 2345-3415 bp Feature: domain Description: RVT_N Location: 2402-2639 bp Feature: domain Description: RVT_N Location: 2402-26 39 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2690-3341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26 90-3341 bp Feature: gene Location: 3546-6461 bp Ori: ONU45618.1 Feature: domain Description: DUF4158 Location: 3585-4050 bp Feature: domain Description: DUF4158 Location: 3585-4050 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5238-6384 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5238-6 384 bp Feature: gene Location: 6607-7272 bp Feature: domain Description: GIIM Note: maturase Location: 6610-6835 bp Feature: domain Description: GIIM Note: maturase Location: 6 6 10-6 835 bp Feature: domain Description: HNHc Note: nucleases Location: 7069-7225 bp Feature: domain Description: HNHc Note: nucleases Location: 706 9-7225 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), GIIM (pfam08388), HNHc (smart00507)