myRT

myRT report for GCA_001993415.1_ASM199341v1

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Seq: MUTA01000056.1 Burkholderia cenocepacia strain VC10926 VC10926_contig-9000005, whole genome shotgun sequence (43122 bp)
Overview 1 RT 1: 1436-5757 bp Neighborhood of RT #1 [1436, 5765] COG3547 RVT-GII GIIM COG4315 PRK12511 Feature: gene Location: 1436-1630 bp Feature: gene Location: 2010-3044 bp Ori: ONU30999.1 Feature: domain Description: COG3547 Location: 2025-2988 bp Feature: domain Description: COG3547 Location: 2025-2988 bp Feature: gene Location: 3215-4582 bp Ori: ONU31000.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3548-4163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3548-41 63 bp Feature: domain Description: GIIM Note: maturase Location: 4223-4424 bp Feature: domain Description: GIIM Note: maturase Location: 4223-4424 bp Feature: gene Location: 4863-5222 bp Ori: ONU31001.1 Feature: domain Description: COG4315 Location: 4884-5220 bp Feature: domain Description: COG431 5 Location: 4884-5220 bp Feature: gene Location: 5250-5765 bp Ori: ONU31002.1 Feature: domain Description: PRK12511 Location: 5262-5757 bp Feature: domain Description: PRK1 251 1 Location: 5262-5757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), PRK12511 (RNA polymerase sigma factor; Provisional)

Seq: MUTA01000138.1 Burkholderia cenocepacia strain VC10926 VC10926_contig-5000013, whole genome shotgun sequence (72093 bp)
Overview 1 RT 1: 29448-33837 bp Neighborhood of RT #1 [29448, 33860] Dcm Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29448-29708 bp Feature: gene Location: 29723-31624 bp Ori: ONU20480.1 Feature: domain Description: Dcm Location: 29756-30362 bp Feature: domain Description: Dcm Location: 2 9756-30362 bp Feature: domain Description: Dcm Location: 31361-31520 bp Feature: domain Description: Dcm Location: 31361-3152 0 bp Feature: gene Location: 31683-32681 bp Ori: ONU20429.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31776-32463 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31776-32 463 bp Feature: gene Location: 33025-33381 bp Ori: ONU20430.1 Feature: domain Description: Avd_like Location: 33052-33358 bp Feature: domain Description: Avd_like Location: 33052 -33358 bp Feature: gene Location: 33396-33860 bp Ori: ONU20431.1 Feature: domain Description: DUF1566 Location: 33657-33837 bp Feature: domain Description: DUF1566 Location: 33657-33837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: MUTA01000113.1 Burkholderia cenocepacia strain VC10926 VC10926_contig-13000010, whole genome shotgun sequence (269771 bp)
Overview 1 RT 1: 11961-15710 bp Neighborhood of RT #1 [11961, 15781] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 11961-12716 bp Ori: ONU24022.1 Feature: domain Description: his_ut_repres Location: 12039-12711 bp Feature: domain Description: his_ut_repres Location: 1203 9-12711 bp Feature: gene Location: 12951-13523 bp Ori: ONU24023.1 Feature: domain Description: FIN Location: 13137-13488 bp Feature: domain Description: FIN Location: 13 13 7-13 488 bp Feature: gene Location: 13777-15126 bp Ori: ONU24024.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14242-14878 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14242-14878 bp Feature: gene Location: 15099-15305 bp Feature: gene Location: 15452-15781 bp Ori: ONU24026.1 Feature: domain Description: Histone_HNS Location: 15473-15710 bp Feature: domain Description: Histone_HNS Location: 15473 -15710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUTA01000025.1 Burkholderia cenocepacia strain VC10926 VC10926_contig-2000002, whole genome shotgun sequence (117692 bp)
Overview 1 RT 1: 110503-117689 bp Neighborhood of RT #1 [110503, 117692] GIIM HNHc DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf COG3547 Feature: gene Location: 110503-111168 bp Feature: domain Description: GIIM Note: maturase Location: 110506-110731 bp Feature: domain Description: GIIM Note: maturase Location: 110506-110731 bp Feature: domain Description: HNHc Note: nucleases Location: 110965-111121 bp Feature: domain Description: HNHc Note: nucleases Location: 110965-111121 bp Feature: gene Location: 111314-114229 bp Ori: ONU35417.1 Feature: domain Description: DUF4158 Location: 111353-111818 bp Feature: domain Description: DUF4 158 Location: 111353-111818 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 113006-114152 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 113006-114 152 bp Feature: gene Location: 114360-115430 bp Feature: domain Description: RVT_N Location: 114417-114654 bp Feature: domain Description: RVT_N Location: 114 4 17-114 654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114705-115356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114 705-115356 bp Feature: gene Location: 116026-117081 bp Ori: ONU35418.1 Feature: domain Description: DEXHc_Snf Location: 116245-116500 bp Feature: domain Description: DEXHc_Snf Location: 11624 5-116500 bp Feature: gene Location: 117416-117692 bp Ori: ONU35419.1 Feature: domain Description: COG3547 Location: 117440-117689 bp Feature: domain Description: COG354 7 Location: 1174 4 0-117689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, DEXHc_Snf (cd17919), COG3547 (Transposase )

Seq: MUTA01000100.1 Burkholderia cenocepacia strain VC10926 VC10926_contig-5000009, whole genome shotgun sequence (46873 bp)
Overview 1 RT 1: 164-5432 bp Neighborhood of RT #1 [164, 5432] HTH_Tnp_1 RVT-UG5 HATPase_c_3 Feature: gene Location: 164-427 bp Ori: ONU25287.1 Feature: domain Description: HTH_Tnp_1 Location: 170-374 bp Feature: domain Description: HTH_Tnp_1 Location: 170-374 bp Feature: gene Location: 494-1948 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 503-977 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 5 03-977 bp Feature: gene Location: 2476-4491 bp Ori: ONU25288.1 Feature: domain Description: HATPase_c_3 Location: 2545-2869 bp Feature: domain Description: HATPase_c_3 Location: 25 45 -2869 bp Feature: gene Location: 4743-5432 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-UG5, HATPase_c_3 (pfam13589)