myRT

myRT report for GCA_001993645.1_ASM199364v1

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Seq: MUUI01000114.1 Burkholderia cenocepacia strain VC6456 VC6456_contig-3000006, whole genome shotgun sequence (95909 bp)
Overview 1 RT 1: 90515-95844 bp Neighborhood of RT #1 [90515, 95909] HATPase_c_3 RVT-UG5 rve_3 Feature: gene Location: 90515-91204 bp Feature: gene Location: 91456-93471 bp Ori: ONW94044.1 Feature: domain Description: HATPase_c_3 Location: 91525-91849 bp Feature: domain Description: HATPase_c_3 Location: 91 525-91 849 bp Feature: gene Location: 93999-95453 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 94008-94482 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 94008-94482 bp Feature: gene Location: 95502-95909 bp Ori: ONW94052.1 Feature: domain Description: rve_3 Location: 95646-95844 bp Feature: domain Description: rve_3 Location: 95646-95844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, rve_3 (pfam13683)

Seq: MUUI01000170.1 Burkholderia cenocepacia strain VC6456 VC6456_contig-25000008, whole genome shotgun sequence (111009 bp)
Overview 1 RT 1: 97299-101711 bp Neighborhood of RT #1 [97299, 101711] DUF1566 Avd_like RVT-DGRs Dcm Dcm Feature: gene Location: 97299-97763 bp Ori: ONW89211.1 Feature: domain Description: DUF1566 Location: 97560-97740 bp Feature: domain Description: DUF1566 Location: 97560-97740 bp Feature: gene Location: 97778-98134 bp Ori: ONW89212.1 Feature: domain Description: Avd_like Location: 97805-98111 bp Feature: domain Description: Avd_like Location: 97805-98111 bp Feature: gene Location: 98478-99476 bp Ori: ONW89213.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 98571-99258 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 98571-992 58 bp Feature: gene Location: 99535-101436 bp Ori: ONW89214.1 Feature: domain Description: Dcm Location: 99568-100174 bp Feature: domain Description: Dcm Location: 99568-100174 bp Feature: domain Description: Dcm Location: 101173-101332 bp Feature: domain Description: Dcm Location: 101173-101332 bp Feature: gene Location: 101451-101711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, Dcm (COG0270)

Seq: MUUI01000113.1 Burkholderia cenocepacia strain VC6456 VC6456_contig-2000006, whole genome shotgun sequence (62041 bp)
Overview 1 RT 1: 20079-27099 bp Neighborhood of RT #1 [20079, 27099] GIIM HNHc DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf Feature: gene Location: 20079-20744 bp Feature: domain Description: GIIM Note: maturase Location: 20082-20307 bp Feature: domain Description: GIIM Note: maturase Location: 20082-203 07 bp Feature: domain Description: HNHc Note: nucleases Location: 20541-20697 bp Feature: domain Description: HNHc Note: nucleases Location: 20541-20697 bp Feature: gene Location: 20890-23805 bp Ori: ONW94071.1 Feature: domain Description: DUF4158 Location: 20929-21394 bp Feature: domain Description: DUF4158 Location: 20929-213 94 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 22582-23728 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 22582-23 728 bp Feature: gene Location: 23936-25006 bp Feature: domain Description: RVT_N Location: 23993-24230 bp Feature: domain Description: RVT_N Location: 23 993 -2423 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24281-24932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24281-2493 2 bp Feature: gene Location: 25602-26657 bp Ori: ONW94072.1 Feature: domain Description: DEXHc_Snf Location: 25821-26076 bp Feature: domain Description: DEXHc_Snf Location: 25821-26076 bp Feature: gene Location: 26794-27099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, DEXHc_Snf (cd17919)

Seq: MUUI01000172.1 Burkholderia cenocepacia strain VC6456 VC6456_contig-27000008, whole genome shotgun sequence (74111 bp)
Overview 1 RT 1: 1783-6391 bp Neighborhood of RT #1 [1783, 6399] COG3547 RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 1783-1977 bp Feature: gene Location: 2357-3391 bp Ori: ONW88521.1 Feature: domain Description: COG3547 Location: 2372-3335 bp Feature: domain Description: COG354 7 Location: 2372-3335 bp Feature: gene Location: 3562-4929 bp Ori: ONW88522.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3895-4510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3895-4 510 bp Feature: domain Description: GIIM Note: maturase Location: 4570-4771 bp Feature: domain Description: GIIM Note: maturase Location: 4 570-4 771 bp Feature: gene Location: 5037-5924 bp Ori: ONW88523.1 Feature: domain Description: RsmI Location: 5085-5898 bp Feature: domain Description: RsmI Location: 5085-5898 bp Feature: gene Location: 5923-6399 bp Ori: ONW88524.1 Feature: domain Description: PRK14673 Location: 5974-6391 bp Feature: domain Description: PRK14 673 Location: 5974 -6391 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)

Seq: MUUI01000092.1 Burkholderia cenocepacia strain VC6456 VC6456_contig-1000005, whole genome shotgun sequence (111631 bp)
Overview 1 RT 1: 11791-15540 bp Neighborhood of RT #1 [11791, 15611] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 11791-12546 bp Ori: ONW95785.1 Feature: domain Description: his_ut_repres Location: 11869-12541 bp Feature: domain Description: his_ut_repres Location: 11869-125 41 bp Feature: gene Location: 12781-13353 bp Ori: ONW95786.1 Feature: domain Description: FIN Location: 12967-13318 bp Feature: domain Description: FIN Location: 12967-13318 bp Feature: gene Location: 13607-14956 bp Ori: ONW95787.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14072-14708 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14072-14708 bp Feature: gene Location: 14929-15135 bp Feature: gene Location: 15282-15611 bp Ori: ONW95789.1 Feature: domain Description: Histone_HNS Location: 15303-15540 bp Feature: domain Description: Histone_HNS Location: 15 303-15 5 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)