myRT

myRT report for GCA_001993675.1_ASM199367v1

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Seq: MUUJ01000163.1 Burkholderia cenocepacia strain VC6823 VC6823_contig-12000013, whole genome shotgun sequence (99093 bp)
Overview 1 RT 1: 29443-33832 bp Neighborhood of RT #1 [29443, 33855] Dcm Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29443-29703 bp Feature: gene Location: 29718-31619 bp Ori: ONX09229.1 Feature: domain Description: Dcm Location: 29751-30357 bp Feature: domain Description: Dcm Location: 29751 -30357 bp Feature: domain Description: Dcm Location: 31356-31515 bp Feature: domain Description: Dcm Location: 31 356-31 51 5 bp Feature: gene Location: 31678-32676 bp Ori: ONX09230.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31771-32458 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31 771 -32458 bp Feature: gene Location: 33020-33376 bp Ori: ONX09231.1 Feature: domain Description: Avd_like Location: 33047-33353 bp Feature: domain Description: Avd_like Location: 33047-33353 bp Feature: gene Location: 33391-33855 bp Ori: ONX09232.1 Feature: domain Description: DUF1566 Location: 33652-33832 bp Feature: domain Description: DUF1 566 Location: 33652-33832 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: MUUJ01000046.1 Burkholderia cenocepacia strain VC6823 VC6823_contig-2000004, whole genome shotgun sequence (46831 bp)
Overview 1 RT 1: 1-5395 bp Neighborhood of RT #1 [1, 5395] rve_3 RVT-UG5 HATPase_c_3 Feature: gene Location: 1-408 bp Ori: ONX22947.1 Feature: domain Description: rve_3 Location: 145-343 bp Feature: domain Description: rve_3 Location: 145-343 bp Feature: gene Location: 457-1911 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 466-940 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 466-940 bp Feature: gene Location: 2439-4454 bp Ori: ONX22948.1 Feature: domain Description: HATPase_c_3 Location: 2508-2832 bp Feature: domain Description: HATPase_c_3 Location: 2 508-2 832 bp Feature: gene Location: 4706-5395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), RVT-UG5, HATPase_c_3 (pfam13589)

Seq: MUUJ01000181.1 Burkholderia cenocepacia strain VC6823 VC6823_contig-15000014, whole genome shotgun sequence (116353 bp)
Overview 1 RT 1: 22-7853 bp Neighborhood of RT #1 [22, 7900] COG3547 DEXHc_Snf RVT_N RVT-GII DUF4158 DDE_Tnp_Tn3 GIIM HNHc Feature: gene Location: 22-987 bp Ori: ONX07084.1 Feature: domain Description: COG3547 Location: 46-982 bp Feature: domain Description: COG3 547 Location: 46-982 bp Feature: gene Location: 1322-2377 bp Ori: ONX07085.1 Feature: domain Description: DEXHc_Snf Location: 1541-1796 bp Feature: domain Description: DEXHc_Snf Location: 1541-1796 bp Feature: gene Location: 2973-4043 bp Feature: domain Description: RVT_N Location: 3030-3267 bp Feature: domain Description: RVT_N Location: 3 03 0-3 267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3318-3969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 18-3 969 bp Feature: gene Location: 4174-7089 bp Ori: ONX07086.1 Feature: domain Description: DUF4158 Location: 4213-4678 bp Feature: domain Description: DUF4158 Location: 4213 -4678 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5866-7012 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5866-7012 bp Feature: gene Location: 7235-7900 bp Feature: domain Description: GIIM Note: maturase Location: 7238-7463 bp Feature: domain Description: GIIM Note: maturase Location: 723 8-7463 bp Feature: domain Description: HNHc Note: nucleases Location: 7697-7853 bp Feature: domain Description: HNHc Note: nucleases Location: 7697-7853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), GIIM (pfam08388), HNHc (smart00507)

Seq: MUUJ01000042.1 Burkholderia cenocepacia strain VC6823 VC6823_contig-9000003, whole genome shotgun sequence (8958 bp)
Overview 1 RT 1: 5725-8713 bp Neighborhood of RT #1 [5725, 8871] COG3547 RVT-GII GIIM Feature: gene Location: 5725-5919 bp Feature: gene Location: 6299-7333 bp Ori: ONX23721.1 Feature: domain Description: COG3547 Location: 6314-7277 bp Feature: domain Description: COG354 7 Location: 6314 -7277 bp Feature: gene Location: 7504-8871 bp Ori: ONX23722.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7837-8452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7837-84 52 bp Feature: domain Description: GIIM Note: maturase Location: 8512-8713 bp Feature: domain Description: GIIM Note: maturase Location: 8512-8713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: MUUJ01000035.1 Burkholderia cenocepacia strain VC6823 VC6823_contig-2000003, whole genome shotgun sequence (141157 bp)
Overview 1 RT 1: 11789-15538 bp Neighborhood of RT #1 [11789, 15609] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 11789-12544 bp Ori: ONX24287.1 Feature: domain Description: his_ut_repres Location: 11867-12539 bp Feature: domain Description: his_ut_repres Location: 11867-125 39 bp Feature: gene Location: 12779-13351 bp Ori: ONX24288.1 Feature: domain Description: FIN Location: 12965-13316 bp Feature: domain Description: FIN Location: 12965 -13316 bp Feature: gene Location: 13605-14954 bp Ori: ONX24289.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14070-14706 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14070-14706 bp Feature: gene Location: 14927-15133 bp Feature: gene Location: 15280-15609 bp Ori: ONX24291.1 Feature: domain Description: Histone_HNS Location: 15301-15538 bp Feature: domain Description: Histone_HNS Location: 15 301-15 5 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUUJ01000089.1 Burkholderia cenocepacia strain VC6823 VC6823_contig-2000008, whole genome shotgun sequence (27239 bp)
Overview 1 RT 1: 1-1955 bp Neighborhood of RT #1 [1, 1963] RVT-GII GIIM COG4315 PRK12511 Feature: gene Location: 1-780 bp Ori: ONX16707.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-36 1 bp Feature: domain Description: GIIM Note: maturase Location: 421-622 bp Feature: domain Description: GIIM Note: maturase Location: 421-6 22 bp Feature: gene Location: 1061-1420 bp Ori: ONX16708.1 Feature: domain Description: COG4315 Location: 1082-1418 bp Feature: domain Description: COG4315 Location: 1082-1418 bp Feature: gene Location: 1448-1963 bp Ori: ONX16709.1 Feature: domain Description: PRK12511 Location: 1460-1955 bp Feature: domain Description: PRK12511 Location: 146 0-1955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), PRK12511 (RNA polymerase sigma factor; Provisional)