myRT

myRT report for GCA_001993685.1_ASM199368v1

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Seq: MUUP01000159.1 Burkholderia cenocepacia strain VC11747 VC11747_contig-14000013, whole genome shotgun sequence (9720 bp)
Overview 1 RT 1: 2977-7585 bp Neighborhood of RT #1 [2977, 7593] COG3547 RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 2977-3171 bp Feature: gene Location: 3551-4585 bp Feature: domain Description: COG3547 Location: 3566-4529 bp Feature: domain Description: COG3547 Location: 3566-4529 bp Feature: gene Location: 4756-6123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5089-5704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5089-5704 bp Feature: domain Description: GIIM Note: maturase Location: 5764-5965 bp Feature: domain Description: GIIM Note: maturase Location: 5764-5965 bp Feature: gene Location: 6231-7118 bp Feature: domain Description: RsmI Location: 6279-7092 bp Feature: domain Description: RsmI Location: 6279-7092 bp Feature: gene Location: 7117-7593 bp Feature: domain Description: PRK14673 Location: 7168-7585 bp Feature: domain Description: PRK1 4673 Location: 71 68-7585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)

Seq: MUUP01000140.1 Burkholderia cenocepacia strain VC11747 VC11747_contig-2000012, whole genome shotgun sequence (81685 bp)
Overview 1 RT 1: 28788-33177 bp Neighborhood of RT #1 [28788, 33200] Dcm Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 28788-29048 bp Feature: gene Location: 29063-30964 bp Feature: domain Description: Dcm Location: 29096-29702 bp Feature: domain Description: Dcm Location: 2 9096-2 9702 bp Feature: domain Description: Dcm Location: 30701-30860 bp Feature: domain Description: Dcm Location: 30701-30860 bp Feature: gene Location: 31023-32021 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31116-31803 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31116-31803 bp Feature: gene Location: 32365-32721 bp Feature: domain Description: Avd_like Location: 32392-32698 bp Feature: domain Description: Avd_like Location: 32 392 -32 698 bp Feature: gene Location: 32736-33200 bp Feature: domain Description: DUF1566 Location: 32997-33177 bp Feature: domain Description: DUF1566 Location: 32 997-33177 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: MUUP01000059.1 Burkholderia cenocepacia strain VC11747 VC11747_contig-6, whole genome shotgun sequence (128867 bp)
Overview 1 RT 1: 1-7772 bp Neighborhood of RT #1 [1, 7819] COG3547 DEXHc_Snf RVT_N RVT-GII DUF4158 DDE_Tnp_Tn3 GIIM HNHc Feature: gene Location: 1-906 bp Feature: domain Description: COG3547 Location: 25-904 bp Feature: domain Description: COG3 547 Location: 25-904 bp Feature: gene Location: 1241-2296 bp Feature: domain Description: DEXHc_Snf Location: 1460-1715 bp Feature: domain Description: DEXHc_Snf Location: 1460-1715 bp Feature: gene Location: 2892-3962 bp Feature: RT Description: RVT_N Location: 2949-3186 bp Feature: RT Description: RVT_N Location: 2949-3 186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3237-3888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 23 7-3 888 bp Feature: gene Location: 4093-7008 bp Feature: domain Description: DUF4158 Location: 4132-4597 bp Feature: domain Description: DUF4158 Location: 413 2-4597 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5785-6931 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5785-693 1 bp Feature: gene Location: 7154-7819 bp Feature: domain Description: GIIM Note: maturase Location: 7157-7382 bp Feature: domain Description: GIIM Note: maturase Location: 7157-73 82 bp Feature: domain Description: HNHc Note: nucleases Location: 7616-7772 bp Feature: domain Description: HNHc Note: nucleases Location: 7616-7772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), COG3547 (Transposase ), RVT_N (pfam13655), RVT-GII, DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), GIIM (pfam08388), HNHc (smart00507)

Seq: MUUP01000173.1 Burkholderia cenocepacia strain VC11747 VC11747_contig-3000015, whole genome shotgun sequence (27239 bp)
Overview 1 RT 1: 25277-27081 bp Neighborhood of RT #1 [25277, 27239] PRK12511 COG4315 RVT-GII GIIM Feature: gene Location: 25277-25792 bp Feature: domain Description: PRK12511 Location: 25289-25784 bp Feature: domain Description: PRK12511 Location: 25289-25784 bp Feature: gene Location: 25820-26179 bp Feature: domain Description: COG4315 Location: 25841-26177 bp Feature: domain Description: COG4 315 Location: 2584 1-26177 bp Feature: gene Location: 26460-27239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26466-26820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264 66-26820 bp Feature: domain Description: GIIM Note: maturase Location: 26880-27081 bp Feature: domain Description: GIIM Note: maturase Location: 26880-27081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12511 (RNA polymerase sigma factor; Provisional), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), RVT-GII, GIIM (pfam08388)

Seq: MUUP01000162.1 Burkholderia cenocepacia strain VC11747 VC11747_contig-17000013, whole genome shotgun sequence (262933 bp)
Overview 1 RT 1: 251247-255062 bp Neighborhood of RT #1 [251247, 255067] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 251247-251576 bp Feature: domain Description: Histone_HNS Location: 251268-251505 bp Feature: domain Description: Histone_HNS Location: 25 1268-25 15 05 bp Feature: gene Location: 251723-251929 bp Feature: gene Location: 251902-253251 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 252367-253003 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25 2367-25 3003 bp Feature: gene Location: 253505-254077 bp Feature: domain Description: FIN Location: 253691-254042 bp Feature: domain Description: FIN Location: 25 3691-25 4042 bp Feature: gene Location: 254312-255067 bp Feature: domain Description: his_ut_repres Location: 254390-255062 bp Feature: domain Description: his_ut_repres Location: 25 4390-25 5 062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)