myRT

myRT report for GCA_001993715.1_ASM199371v1

Download annotations/find similar RTs

Seq: MUUS01000003.1 Burkholderia cenocepacia strain VC14358 VC14358_contig-2000000, whole genome shotgun sequence (192980 bp)
Overview 1 RT 1: 84956-89368 bp Neighborhood of RT #1 [84956, 89368] DUF1566 Avd_like RVT-DGRs Dcm Dcm Feature: gene Location: 84956-85420 bp Ori: ONX52275.1 Feature: domain Description: DUF1566 Location: 85217-85397 bp Feature: domain Description: DUF1 566 Location: 8521 7-85397 bp Feature: gene Location: 85435-85791 bp Ori: ONX52276.1 Feature: domain Description: Avd_like Location: 85462-85768 bp Feature: domain Description: Avd_like Location: 85462-85768 bp Feature: gene Location: 86135-87133 bp Ori: ONX52277.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 86228-86915 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 86228-8691 5 bp Feature: gene Location: 87192-89093 bp Ori: ONX52278.1 Feature: domain Description: Dcm Location: 87225-87831 bp Feature: domain Description: Dcm Location: 87225-87831 bp Feature: domain Description: Dcm Location: 88830-88989 bp Feature: domain Description: Dcm Location: 88830-88989 bp Feature: gene Location: 89108-89368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, Dcm (COG0270)

Seq: MUUS01000100.1 Burkholderia cenocepacia strain VC14358 VC14358_contig-15000005, whole genome shotgun sequence (43921 bp)
Overview 1 RT 1: 31007-37221 bp Neighborhood of RT #1 [31007, 37262] COG3547 RVT-GII GIIM RpiR PRK09054 Feature: gene Location: 31007-31201 bp Feature: gene Location: 31581-32615 bp Ori: ONX44228.1 Feature: domain Description: COG3547 Location: 31596-32559 bp Feature: domain Description: COG3547 Location: 31596-32 559 bp Feature: gene Location: 32786-34153 bp Ori: ONX44229.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33119-33734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33119-33734 bp Feature: domain Description: GIIM Note: maturase Location: 33794-33995 bp Feature: domain Description: GIIM Note: maturase Location: 33794-33995 bp Feature: gene Location: 34263-35111 bp Ori: ONX44230.1 Feature: domain Description: RpiR Location: 34266-35088 bp Feature: domain Description: RpiR Location: 342 66-35088 bp Feature: gene Location: 35406-37262 bp Ori: ONX44231.1 Feature: domain Description: PRK09054 Location: 35418-37221 bp Feature: domain Description: PRK09054 Location: 35418-372 2 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RpiR (COG1737), PRK09054 (phosphogluconate dehydratase; Validated)

Seq: MUUS01000272.1 Burkholderia cenocepacia strain VC14358 VC14358_contig-3000015, whole genome shotgun sequence (59983 bp)
Overview 1 RT 1: 12322-16071 bp Neighborhood of RT #1 [12322, 16142] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 12322-13077 bp Ori: ONX29623.1 Feature: domain Description: his_ut_repres Location: 12400-13072 bp Feature: domain Description: his_ut_repres Location: 12400-13 072 bp Feature: gene Location: 13312-13884 bp Ori: ONX29624.1 Feature: domain Description: FIN Location: 13498-13849 bp Feature: domain Description: FIN Location: 13 498-13 849 bp Feature: gene Location: 14138-15487 bp Ori: ONX29625.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14603-15239 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14603 -1523 9 bp Feature: gene Location: 15460-15666 bp Feature: gene Location: 15813-16142 bp Ori: ONX29627.1 Feature: domain Description: Histone_HNS Location: 15834-16071 bp Feature: domain Description: Histone_HNS Location: 1583 4-16071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUUS01000134.1 Burkholderia cenocepacia strain VC14358 VC14358_contig-10000007, whole genome shotgun sequence (13331 bp)
Overview 1 RT 1: 7732-13331 bp Neighborhood of RT #1 [7732, 13331] HATPase_c_3 RVT-UG5 Feature: gene Location: 7732-8421 bp Feature: gene Location: 8673-10688 bp Ori: ONX41668.1 Feature: domain Description: HATPase_c_3 Location: 8742-9066 bp Feature: domain Description: HATPase_c_3 Location: 874 2-9066 bp Feature: gene Location: 11216-12670 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 11225-11699 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 11225-11699 bp Feature: gene Location: 12719-13331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5

Seq: MUUS01000212.1 Burkholderia cenocepacia strain VC14358 VC14358_contig-21000011, whole genome shotgun sequence (25566 bp)
Overview 1 RT 1: 1-7219 bp Neighborhood of RT #1 [1, 7266] COG3547 DEXHc_Snf RVT_N RVT-GII DUF4158 DDE_Tnp_Tn3 GIIM HNHc Feature: gene Location: 1-353 bp Ori: ONX35471.1 Feature: domain Description: COG3547 Location: 25-334 bp Feature: domain Description: COG35 47 Location: 25 -334 bp Feature: gene Location: 688-1743 bp Ori: ONX35458.1 Feature: domain Description: DEXHc_Snf Location: 907-1162 bp Feature: domain Description: DEXHc_Snf Location: 907-1162 bp Feature: gene Location: 2339-3409 bp Feature: domain Description: RVT_N Location: 2396-2633 bp Feature: domain Description: RVT_N Location: 2396-2633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2684-3335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2684-3335 bp Feature: gene Location: 3540-6455 bp Ori: ONX35459.1 Feature: domain Description: DUF4158 Location: 3579-4044 bp Feature: domain Description: DUF415 8 Location: 35 79-4044 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5232-6378 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5 232-6378 bp Feature: gene Location: 6601-7266 bp Feature: domain Description: GIIM Note: maturase Location: 6604-6829 bp Feature: domain Description: GIIM Note: maturase Location: 6604-6829 bp Feature: domain Description: HNHc Note: nucleases Location: 7063-7219 bp Feature: domain Description: HNHc Note: nucleases Location: 7063-7219 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), GIIM (pfam08388), HNHc (smart00507)