myRT

myRT report for GCA_001993725.1_ASM199372v1

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Seq: MUUT01000267.1 Burkholderia cenocepacia strain VC6972 VC6972_contig-28000008, whole genome shotgun sequence (14363 bp)
Overview 1 RT 1: 6274-11824 bp Neighborhood of RT #1 [6274, 11824] RVT-GII SRAP Feature: gene Location: 6274-6489 bp Feature: gene Location: 6652-7071 bp Feature: gene Location: 7643-9175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8054-8744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8054-8744 bp Feature: gene Location: 9231-10142 bp Feature: domain Description: SRAP Location: 9591-10107 bp Feature: domain Description: SRAP Location: 9591 -1 01 07 bp Feature: gene Location: 10838-11824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SRAP (pfam02586)

Seq: MUUT01000064.1 Burkholderia cenocepacia strain VC6972 VC6972_contig-2000002, whole genome shotgun sequence (106850 bp)
Overview 1 RT 1: 49187-52936 bp Neighborhood of RT #1 [49187, 53007] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49187-49942 bp Feature: domain Description: his_ut_repres Location: 49265-49937 bp Feature: domain Description: his_ut_repres Location: 492 65-49937 bp Feature: gene Location: 50177-50749 bp Feature: domain Description: FIN Location: 50363-50714 bp Feature: domain Description: FIN Location: 50363-50714 bp Feature: gene Location: 51003-52352 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51468-52104 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51468-52 104 bp Feature: gene Location: 52325-52531 bp Feature: gene Location: 52678-53007 bp Feature: domain Description: Histone_HNS Location: 52699-52936 bp Feature: domain Description: Histone_HNS Location: 52 699-52 936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUUT01000115.1 Burkholderia cenocepacia strain VC6972 VC6972_contig-27000003, whole genome shotgun sequence (118620 bp)
Overview 1 RT 1: 12991-18275 bp Neighborhood of RT #1 [12991, 18289] COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 12991-13290 bp Feature: gene Location: 13599-14633 bp Feature: domain Description: COG3547 Location: 13614-14577 bp Feature: domain Description: COG3 547 Location: 13 614-14577 bp Feature: gene Location: 14804-16171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15137-15752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1513 7-15752 bp Feature: domain Description: GIIM Note: maturase Location: 15812-16013 bp Feature: domain Description: GIIM Note: maturase Location: 15812-16013 bp Feature: gene Location: 16291-17256 bp Feature: domain Description: GDP_MD_SDR_e Location: 16327-17224 bp Feature: domain Description: GDP_MD_SDR_e Location: 163 27-17224 bp Feature: gene Location: 17243-18289 bp Feature: domain Description: Gmd Location: 17258-18275 bp Feature: domain Description: Gmd Location: 17258-18275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089)

Seq: MUUT01000099.1 Burkholderia cenocepacia strain VC6972 VC6972_contig-11000003, whole genome shotgun sequence (29742 bp)
Overview 1 RT 1: 23800-29482 bp Neighborhood of RT #1 [23800, 29640] MFS_SV2_like MscK RVT-GII GIIM Feature: gene Location: 23800-25218 bp Feature: domain Description: MFS_SV2_like Location: 23920-25171 bp Feature: domain Description: MFS_SV2_like Location: 23920-25171 bp Feature: gene Location: 25667-28129 bp Feature: domain Description: MscK Location: 25745-28088 bp Feature: domain Description: MscK Location: 2574 5-28088 bp Feature: gene Location: 28273-29640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28606-29221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28606-29221 bp Feature: domain Description: GIIM Note: maturase Location: 29281-29482 bp Feature: domain Description: GIIM Note: maturase Location: 29281-294 82 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_SV2_like (cd17316), MscK (COG3264), RVT-GII, GIIM (pfam08388)

Seq: MUUT01000402.1 Burkholderia cenocepacia strain VC6972 VC6972_contig-26000013, whole genome shotgun sequence (12087 bp)
Overview 1 RT 1: 4244-7795 bp Neighborhood of RT #1 [4244, 7803] TnpB_IS66 RVT-GII PRK09409 PRK09183 Feature: gene Location: 4244-4576 bp Feature: domain Description: TnpB_IS66 Location: 4271-4559 bp Feature: domain Description: TnpB_IS66 Location: 4271-45 5 9 bp Feature: gene Location: 4580-4902 bp Feature: gene Location: 4906-5841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5317-5833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 317-5 833 bp Feature: gene Location: 5872-6759 bp Feature: domain Description: PRK09409 Location: 5875-6742 bp Feature: domain Description: PRK09409 Location: 5 875 -6742 bp Feature: gene Location: 7030-7803 bp Feature: domain Description: PRK09183 Location: 7033-7795 bp Feature: domain Description: PRK09183 Location: 7033-7795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, PRK09409 (IS2 transposase TnpB; Reviewed), PRK09183 (transposase/IS protein; Provisional)

Seq: MUUT01000375.1 Burkholderia cenocepacia strain VC6972 VC6972_contig-24000012, whole genome shotgun sequence (11493 bp)
Overview 1 RT 1: 6274-10823 bp Neighborhood of RT #1 [6274, 10855] RVT-GII D Feature: gene Location: 6274-6489 bp Feature: gene Location: 6652-7071 bp Feature: gene Location: 7643-9173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8054-8744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8054-8744 bp Feature: gene Location: 9301-9597 bp Feature: gene Location: 9785-10855 bp Feature: domain Description: D Location: 9839-10823 bp Feature: domain Description: D Location: 9839-10823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, D (PHA02561)