myRT

myRT report for GCA_001993755.1_ASM199375v1

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Seq: MUUZ01000121.1 Burkholderia cenocepacia strain VC8319 VC8319_contig-9, whole genome shotgun sequence (89476 bp)
Overview 1 RT 1: 40329-44910 bp Neighborhood of RT #1 [40329, 44910] D RVT-GII Feature: gene Location: 40329-41399 bp Feature: domain Description: D Location: 40383-41367 bp Feature: domain Description: D Location: 40383-41 367 bp Feature: gene Location: 41587-41883 bp Feature: gene Location: 42011-43541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42422-43112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42422-431 1 2 bp Feature: gene Location: 44113-44532 bp Feature: gene Location: 44695-44910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MUUZ01000165.1 Burkholderia cenocepacia strain VC8319 VC8319_contig-4000012, whole genome shotgun sequence (7304 bp)
Overview 1 RT 1: 4853-7183 bp Neighborhood of RT #1 [4853, 7203] TnpB_IS66 RVT-GII PRK14702 Feature: gene Location: 4853-5185 bp Feature: domain Description: TnpB_IS66 Location: 4880-5168 bp Feature: domain Description: TnpB_IS66 Location: 4880-5168 bp Feature: gene Location: 5189-5511 bp Feature: gene Location: 5515-6450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5926-6442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 592 6-6442 bp Feature: gene Location: 6481-7203 bp Feature: domain Description: PRK14702 Location: 6484-7183 bp Feature: domain Description: PRK14702 Location: 6484-7183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, PRK14702 (insertion element IS2 transposase InsD; Provisional)

Seq: MUUZ01000095.1 Burkholderia cenocepacia strain VC8319 VC8319_contig-4000007, whole genome shotgun sequence (62769 bp)
Overview 1 RT 1: 56827-62509 bp Neighborhood of RT #1 [56827, 62667] MFS_SV2_like MscK RVT-GII GIIM Feature: gene Location: 56827-58245 bp Feature: domain Description: MFS_SV2_like Location: 56947-58198 bp Feature: domain Description: MFS_SV2_like Location: 56947-58198 bp Feature: gene Location: 58694-61156 bp Feature: domain Description: MscK Location: 58772-61115 bp Feature: domain Description: MscK Location: 58772-61115 bp Feature: gene Location: 61300-62667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61633-62248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6163 3 -62248 bp Feature: domain Description: GIIM Note: maturase Location: 62308-62509 bp Feature: domain Description: GIIM Note: maturase Location: 623 08-62509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_SV2_like (cd17316), MscK (COG3264), RVT-GII, GIIM (pfam08388)

Seq: MUUZ01000109.1 Burkholderia cenocepacia strain VC8319 VC8319_contig-1000008, whole genome shotgun sequence (149110 bp)
Overview 1 RT 1: 49143-52892 bp Neighborhood of RT #1 [49143, 52963] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49143-49898 bp Feature: domain Description: his_ut_repres Location: 49221-49893 bp Feature: domain Description: his_ut_repres Location: 4 9221-4 9893 bp Feature: gene Location: 50133-50705 bp Feature: domain Description: FIN Location: 50319-50670 bp Feature: domain Description: FIN Location: 50319-50670 bp Feature: gene Location: 50959-52308 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51424-52060 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 514 24 -52060 bp Feature: gene Location: 52281-52487 bp Feature: gene Location: 52634-52963 bp Feature: domain Description: Histone_HNS Location: 52655-52892 bp Feature: domain Description: Histone_HNS Location: 52655-52892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUUZ01000003.1 Burkholderia cenocepacia strain VC8319 VC8319_contig-2000000, whole genome shotgun sequence (124808 bp)
Overview 1 RT 1: 120109-124743 bp Neighborhood of RT #1 [120109, 124799] Gmd GDP_MD_SDR_e RVT-GII GIIM COG3547 Feature: gene Location: 120109-121155 bp Feature: domain Description: Gmd Location: 120124-121141 bp Feature: domain Description: Gmd Location: 120124-121141 bp Feature: gene Location: 121142-122107 bp Feature: domain Description: GDP_MD_SDR_e Location: 121178-122075 bp Feature: domain Description: GDP_MD_SDR_e Location: 121178-122075 bp Feature: gene Location: 122227-123594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122560-123175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1225 60-123175 bp Feature: domain Description: GIIM Note: maturase Location: 123235-123436 bp Feature: domain Description: GIIM Note: maturase Location: 123235 -123436 bp Feature: gene Location: 123765-124799 bp Feature: domain Description: COG3547 Location: 123780-124743 bp Feature: domain Description: COG35 47 Location: 123780-124743 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUUZ01000045.1 Burkholderia cenocepacia strain VC8319 VC8319_contig-5000003, whole genome shotgun sequence (7759 bp)
Overview 1 RT 1: 3399-7149 bp Neighborhood of RT #1 [3399, 7580] SRAP RVT-GII Feature: gene Location: 3399-4385 bp Feature: gene Location: 5081-5992 bp Feature: domain Description: SRAP Location: 5441-5957 bp Feature: domain Description: SRAP Location: 5441-5957 bp Feature: gene Location: 6048-7580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6459-7149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 459-7149 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII