myRT

myRT report for GCA_001993765.1_ASM199376v1

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Seq: MUUY01000134.1 Burkholderia cenocepacia strain VC7879 VC7879_contig-2000013, whole genome shotgun sequence (44004 bp)
Overview 1 RT 1: 180-3360 bp Neighborhood of RT #1 [180, 3392] RVT-GII D Feature: gene Location: 180-1710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 591-1281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 591 -1 281 bp Feature: gene Location: 1838-2134 bp Feature: gene Location: 2322-3392 bp Feature: domain Description: D Location: 2376-3360 bp Feature: domain Description: D Location: 2376-3360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, D (PHA02561)

Seq: MUUY01000092.1 Burkholderia cenocepacia strain VC7879 VC7879_contig-6000008, whole genome shotgun sequence (7591 bp)
Overview 1 RT 1: 4244-7591 bp Neighborhood of RT #1 [4244, 7591] TnpB_IS66 RVT-GII PRK09409 Feature: gene Location: 4244-4576 bp Feature: domain Description: TnpB_IS66 Location: 4271-4559 bp Feature: domain Description: TnpB_IS66 Location: 42 71-4559 bp Feature: gene Location: 4580-4902 bp Feature: gene Location: 4906-5841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5317-5833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5317-5833 bp Feature: gene Location: 5872-6759 bp Feature: domain Description: PRK09409 Location: 5875-6742 bp Feature: domain Description: PRK09409 Location: 5875-6742 bp Feature: gene Location: 7030-7591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, PRK09409 (IS2 transposase TnpB; Reviewed)

Seq: MUUY01000027.1 Burkholderia cenocepacia strain VC7879 VC7879_contig-12000002, whole genome shotgun sequence (33326 bp)
Overview 1 RT 1: 30059-33081 bp Neighborhood of RT #1 [30059, 33239] COG3547 RVT-GII GIIM Feature: gene Location: 30059-30358 bp Feature: gene Location: 30667-31701 bp Feature: domain Description: COG3547 Location: 30682-31645 bp Feature: domain Description: COG3 547 Location: 3 0682-3 1645 bp Feature: gene Location: 31872-33239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32208-32820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 2208-3 2820 bp Feature: domain Description: GIIM Note: maturase Location: 32880-33081 bp Feature: domain Description: GIIM Note: maturase Location: 3 2880-3 3 081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: MUUY01000111.1 Burkholderia cenocepacia strain VC7879 VC7879_contig-7000010, whole genome shotgun sequence (56566 bp)
Overview 1 RT 1: 180-4361 bp Neighborhood of RT #1 [180, 4361] RVT-GII SRAP Feature: gene Location: 180-1712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 591-1281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 591-1281 bp Feature: gene Location: 1768-2679 bp Feature: domain Description: SRAP Location: 2128-2644 bp Feature: domain Description: SRAP Location: 2128-264 4 bp Feature: gene Location: 3375-4361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MUUY01000130.1 Burkholderia cenocepacia strain VC7879 VC7879_contig-7000012, whole genome shotgun sequence (15625 bp)
Overview 1 RT 1: 10117-15433 bp Neighborhood of RT #1 [10117, 15591] MFS_SV2_like MscK RVT-GII GIIM Feature: gene Location: 10117-11535 bp Feature: domain Description: MFS_SV2_like Location: 10237-11488 bp Feature: domain Description: MFS_SV2_like Location: 10237-11488 bp Feature: gene Location: 11984-14446 bp Feature: domain Description: MscK Location: 12062-14405 bp Feature: domain Description: MscK Location: 12062-14405 bp Feature: gene Location: 14590-15591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14593-15172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145 93-15 172 bp Feature: domain Description: GIIM Note: maturase Location: 15232-15433 bp Feature: domain Description: GIIM Note: maturase Location: 15 232-15 433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_SV2_like (cd17316), MscK (COG3264), RVT-GII, GIIM (pfam08388)

Seq: MUUY01000124.1 Burkholderia cenocepacia strain VC7879 VC7879_contig-1000012, whole genome shotgun sequence (123281 bp)
Overview 1 RT 1: 120128-123089 bp Neighborhood of RT #1 [120128, 123247] Gmd GDP_MD_SDR_e RVT-GII GIIM Feature: gene Location: 120128-121174 bp Feature: domain Description: Gmd Location: 120143-121160 bp Feature: domain Description: Gmd Location: 120143-12116 0 bp Feature: gene Location: 121161-122126 bp Feature: domain Description: GDP_MD_SDR_e Location: 121197-122094 bp Feature: domain Description: GDP_MD_SDR_e Location: 121197-122094 bp Feature: gene Location: 122246-123247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122249-122828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122249-122828 bp Feature: domain Description: GIIM Note: maturase Location: 122888-123089 bp Feature: domain Description: GIIM Note: maturase Location: 122888-123089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388)

Seq: MUUY01000101.1 Burkholderia cenocepacia strain VC7879 VC7879_contig-5000009, whole genome shotgun sequence (47253 bp)
Overview 1 RT 1: 1-2691 bp Neighborhood of RT #1 [1, 2691] RVT-GII Feature: gene Location: 1-1322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412-1102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412-1102 bp Feature: gene Location: 1894-2313 bp Feature: gene Location: 2476-2691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MUUY01000113.1 Burkholderia cenocepacia strain VC7879 VC7879_contig-11, whole genome shotgun sequence (202620 bp)
Overview 1 RT 1: 49047-52796 bp Neighborhood of RT #1 [49047, 52867] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49047-49802 bp Feature: domain Description: his_ut_repres Location: 49125-49797 bp Feature: domain Description: his_ut_repres Location: 49125-49797 bp Feature: gene Location: 50037-50609 bp Feature: domain Description: FIN Location: 50223-50574 bp Feature: domain Description: FIN Location: 50223-50574 bp Feature: gene Location: 50863-52212 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51328-51964 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51328 -51964 bp Feature: gene Location: 52185-52391 bp Feature: gene Location: 52538-52867 bp Feature: domain Description: Histone_HNS Location: 52559-52796 bp Feature: domain Description: Histone_HNS Location: 52559-52796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)