myRT

myRT report for GCA_001993795.1_ASM199379v1

Download annotations/find similar RTs

Seq: MUVA01000108.1 Burkholderia cenocepacia strain VC9444 VC9444_contig-16000005, whole genome shotgun sequence (51023 bp)
Overview 1 RT 1: 7-5292 bp Neighborhood of RT #1 [7, 5306] COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 7-306 bp Feature: gene Location: 615-1649 bp Feature: domain Description: COG3547 Location: 630-1593 bp Feature: domain Description: COG3547 Location: 630-1 593 bp Feature: gene Location: 1821-3188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2154-2769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 54-2769 bp Feature: domain Description: GIIM Note: maturase Location: 2829-3030 bp Feature: domain Description: GIIM Note: maturase Location: 2829-3030 bp Feature: gene Location: 3308-4273 bp Feature: domain Description: GDP_MD_SDR_e Location: 3344-4241 bp Feature: domain Description: GDP_MD_SDR_e Location: 3344-4241 bp Feature: gene Location: 4260-5306 bp Feature: domain Description: Gmd Location: 4275-5292 bp Feature: domain Description: Gmd Location: 4275-5292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089), COG3547 (Transposase )

Seq: MUVA01000148.1 Burkholderia cenocepacia strain VC9444 VC9444_contig-2000008, whole genome shotgun sequence (62745 bp)
Overview 1 RT 1: 73-5866 bp Neighborhood of RT #1 [73, 5913] RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 73-1440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 406-1021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 406-102 1 bp Feature: domain Description: GIIM Note: maturase Location: 1081-1282 bp Feature: domain Description: GIIM Note: maturase Location: 1081-12 82 bp Feature: gene Location: 1584-4046 bp Feature: domain Description: MscK Location: 1662-4005 bp Feature: domain Description: MscK Location: 1662 -4005 bp Feature: gene Location: 4495-5913 bp Feature: domain Description: MFS_SV2_like Location: 4615-5866 bp Feature: domain Description: MFS_SV2 _like Location: 4615-5866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MscK (COG3264), MFS_SV2_like (cd17316), RVT-GII, GIIM (pfam08388)

Seq: MUVA01000034.1 Burkholderia cenocepacia strain VC9444 VC9444_contig-12000001, whole genome shotgun sequence (22576 bp)
Overview 1 RT 1: 6318-10867 bp Neighborhood of RT #1 [6318, 10899] RVT-GII D Feature: gene Location: 6318-6533 bp Feature: gene Location: 6696-7115 bp Feature: gene Location: 7687-9217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8098-8788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8098-8788 bp Feature: gene Location: 9345-9641 bp Feature: gene Location: 9829-10899 bp Feature: domain Description: D Location: 9883-10867 bp Feature: domain Description: D Location: 9883 -10867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, D (PHA02561)

Seq: MUVA01000051.1 Burkholderia cenocepacia strain VC9444 VC9444_contig-3, whole genome shotgun sequence (56890 bp)
Overview 1 RT 1: 52532-56282 bp Neighborhood of RT #1 [52532, 56711] SRAP RVT-GII Feature: gene Location: 52532-53518 bp Feature: gene Location: 54214-55125 bp Feature: domain Description: SRAP Location: 54574-55090 bp Feature: domain Description: SRAP Location: 54 574 -55090 bp Feature: gene Location: 55181-56711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55592-56282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55592-56282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MUVA01000159.1 Burkholderia cenocepacia strain VC9444 VC9444_contig-13000008, whole genome shotgun sequence (8796 bp)
Overview 1 RT 1: 4612-8163 bp Neighborhood of RT #1 [4612, 8171] TnpB_IS66 RVT-GII PRK09409 PRK09183 Feature: gene Location: 4612-4944 bp Feature: domain Description: TnpB_IS66 Location: 4639-4927 bp Feature: domain Description: TnpB_IS66 Location: 4639-4927 bp Feature: gene Location: 4948-5270 bp Feature: gene Location: 5274-6209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5685-6201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 685 -6201 bp Feature: gene Location: 6240-7127 bp Feature: domain Description: PRK09409 Location: 6243-7110 bp Feature: domain Description: PRK09409 Location: 6243-7110 bp Feature: gene Location: 7398-8171 bp Feature: domain Description: PRK09183 Location: 7401-8163 bp Feature: domain Description: PRK09183 Location: 7401-8163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, PRK09409 (IS2 transposase TnpB; Reviewed), PRK09183 (transposase/IS protein; Provisional)

Seq: MUVA01000042.1 Burkholderia cenocepacia strain VC9444 VC9444_contig-7000002, whole genome shotgun sequence (135467 bp)
Overview 1 RT 1: 49148-52897 bp Neighborhood of RT #1 [49148, 52968] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49148-49903 bp Feature: domain Description: his_ut_repres Location: 49226-49898 bp Feature: domain Description: his_ut_repres Location: 49226 -49898 bp Feature: gene Location: 50138-50710 bp Feature: domain Description: FIN Location: 50324-50675 bp Feature: domain Description: FIN Location: 50324-506 75 bp Feature: gene Location: 50964-52313 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51429-52065 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51429-5206 5 bp Feature: gene Location: 52286-52492 bp Feature: gene Location: 52639-52968 bp Feature: domain Description: Histone_HNS Location: 52660-52897 bp Feature: domain Description: Histone_HNS Location: 526 6 0-52897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)