myRT

myRT report for GCA_001993805.1_ASM199380v1

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Seq: MUVE01000238.1 Burkholderia cenocepacia strain VC6660 VC6660_contig-8000014, whole genome shotgun sequence (4052 bp)
Overview 1 RT 1: 1-3162 bp Neighborhood of RT #1 [1, 3593] SRAP RVT-GII Feature: gene Location: 1-398 bp Feature: gene Location: 1094-2005 bp Feature: domain Description: SRAP Location: 1454-1970 bp Feature: domain Description: SRAP Location: 1 454-1 970 bp Feature: gene Location: 2061-3593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2472-3162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2472-31 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MUVE01000170.1 Burkholderia cenocepacia strain VC6660 VC6660_contig-7000010, whole genome shotgun sequence (84867 bp)
Overview 1 RT 1: 40268-44851 bp Neighborhood of RT #1 [40268, 44851] D RVT-GII Feature: gene Location: 40268-41338 bp Feature: domain Description: D Location: 40322-41306 bp Feature: domain Description: D Location: 4032 2 -41306 bp Feature: gene Location: 41526-41822 bp Feature: gene Location: 41950-43482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42361-43051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 361-43051 bp Feature: gene Location: 44054-44473 bp Feature: gene Location: 44636-44851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MUVE01000113.1 Burkholderia cenocepacia strain VC6660 VC6660_contig-4000007, whole genome shotgun sequence (100331 bp)
Overview 1 RT 1: 72-2405 bp Neighborhood of RT #1 [72, 2422] PRK14702 RVT-GII TnpB_IS66 Feature: gene Location: 72-794 bp Feature: domain Description: PRK14702 Location: 75-774 bp Feature: domain Description: PRK14702 Location: 75-774 bp Feature: gene Location: 825-1760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1236-1752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123 6-1752 bp Feature: gene Location: 1764-2086 bp Feature: gene Location: 2090-2422 bp Feature: domain Description: TnpB_IS66 Location: 2117-2405 bp Feature: domain Description: TnpB_IS66 Location: 2117-2405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), PRK14702 (insertion element IS2 transposase InsD; Provisional), RVT-GII

Seq: MUVE01000133.1 Burkholderia cenocepacia strain VC6660 VC6660_contig-4000008, whole genome shotgun sequence (63081 bp)
Overview 1 RT 1: 166-5959 bp Neighborhood of RT #1 [166, 6006] RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 166-1533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 99-1114 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: domain Description: GIIM Note: maturase Location: 1174 -1375 bp Feature: gene Location: 1677-4139 bp Feature: domain Description: MscK Location: 1755-4098 bp Feature: domain Description: MscK Location: 1755-4 098 bp Feature: gene Location: 4588-6006 bp Feature: domain Description: MFS_SV2_like Location: 4708-5959 bp Feature: domain Description: MFS_SV2_like Location: 4 708-5959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)

Seq: MUVE01000091.1 Burkholderia cenocepacia strain VC6660 VC6660_contig-18000005, whole genome shotgun sequence (137523 bp)
Overview 1 RT 1: 49510-53259 bp Neighborhood of RT #1 [49510, 53330] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49510-50265 bp Feature: domain Description: his_ut_repres Location: 49588-50260 bp Feature: domain Description: his_ut_repres Location: 495 88-5 0260 bp Feature: gene Location: 50500-51072 bp Feature: domain Description: FIN Location: 50686-51037 bp Feature: domain Description: FIN Location: 5 0686-5 1037 bp Feature: gene Location: 51326-52675 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51791-52427 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5 1791-5 2427 bp Feature: gene Location: 52648-52854 bp Feature: gene Location: 53001-53330 bp Feature: domain Description: Histone_HNS Location: 53022-53259 bp Feature: domain Description: Histone_HNS Location: 5 3022-5 325 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUVE01000090.1 Burkholderia cenocepacia strain VC6660 VC6660_contig-17000005, whole genome shotgun sequence (56691 bp)
Overview 1 RT 1: 51387-56685 bp Neighborhood of RT #1 [51387, 56685] Gmd GDP_MD_SDR_e RVT-GII GIIM COG3547 Feature: gene Location: 51387-52433 bp Feature: domain Description: Gmd Location: 51402-52419 bp Feature: domain Description: Gmd Location: 51402-52419 bp Feature: gene Location: 52420-53385 bp Feature: domain Description: GDP_MD_SDR_e Location: 52456-53353 bp Feature: domain Description: GDP_MD_SDR_e Location: 52456 -53353 bp Feature: gene Location: 53505-54872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53838-54453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53838-54453 bp Feature: domain Description: GIIM Note: maturase Location: 54513-54714 bp Feature: domain Description: GIIM Note: maturase Location: 54513-54714 bp Feature: gene Location: 55043-56077 bp Feature: domain Description: COG3547 Location: 55058-56021 bp Feature: domain Description: COG3547 Location: 55058-56 021 bp Feature: gene Location: 56386-56685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )