myRT

myRT report for GCA_001993825.1_ASM199382v1

Download annotations/find similar RTs

Seq: MUVJ01000103.1 Burkholderia cenocepacia strain VC4477 VC4477_contig-3000008, whole genome shotgun sequence (140953 bp)
Overview 1 RT 1: 11588-15337 bp Neighborhood of RT #1 [11588, 15408] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 11588-12343 bp Feature: domain Description: his_ut_repres Location: 11666-12338 bp Feature: domain Description: his_ut_repres Location: 1 1 666-1 2338 bp Feature: gene Location: 12578-13150 bp Feature: domain Description: FIN Location: 12764-13115 bp Feature: domain Description: FIN Location: 1 2764-1 31 1 5 bp Feature: gene Location: 13404-14753 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13869-14505 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 3869-1 4505 bp Feature: gene Location: 14726-14932 bp Feature: gene Location: 15079-15408 bp Feature: domain Description: Histone_HNS Location: 15100-15337 bp Feature: domain Description: Histone_HNS Location: 1 51 00-1 5337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUVJ01000052.1 Burkholderia cenocepacia strain VC4477 VC4477_contig-9000004, whole genome shotgun sequence (27643 bp)
Overview 1 RT 1: 6392-11817 bp Neighborhood of RT #1 [6392, 11837] DLH GatA RVT-GII GIIM fadh2 YvlD Feature: gene Location: 6392-7084 bp Feature: domain Description: DLH Location: 6404-7082 bp Feature: domain Description: DLH Location: 6404-7082 bp Feature: gene Location: 7165-8643 bp Feature: domain Description: GatA Location: 7192-8620 bp Feature: domain Description: GatA Location: 7192 -862 0 bp Feature: gene Location: 8753-10150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9086-9704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9086-9704 bp Feature: domain Description: GIIM Note: maturase Location: 9755-9965 bp Feature: domain Description: GIIM Note: maturase Location: 9755-9965 bp Feature: gene Location: 10623-11453 bp Feature: domain Description: fadh2 Location: 10641-11445 bp Feature: domain Description: fadh2 Location: 10641-11445 bp Feature: gene Location: 11484-11837 bp Feature: domain Description: YvlD Location: 11487-11817 bp Feature: domain Description: YvlD Location: 11487-11817 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fadh2 (TIGR00676), YvlD (COG1950), DLH (pfam01738), GatA (COG0154), RVT-GII, GIIM (pfam08388)

Seq: MUVJ01000012.1 Burkholderia cenocepacia strain VC4477 VC4477_contig-11000000, whole genome shotgun sequence (3809 bp)
Overview 1 RT 1: 1-3524 bp Neighborhood of RT #1 [1, 3524] RVT-GII GIIM Feature: gene Location: 1-1267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 4-949 bp Feature: domain Description: GIIM Note: maturase Location: 1009-1210 bp Feature: domain Description: GIIM Note: maturase Location: 1009-1210 bp Feature: gene Location: 1338-1667 bp Feature: gene Location: 1797-3524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MUVJ01000073.1 Burkholderia cenocepacia strain VC4477 VC4477_contig-3000006, whole genome shotgun sequence (142705 bp)
Overview 1 RT 1: 114170-122547 bp Neighborhood of RT #1 [114170, 122768] PRK05643 gyrB RVT-Retrons YjgR YjgR SIR2_2 Feature: gene Location: 114170-115276 bp Feature: domain Description: PRK05643 Location: 114182-115274 bp Feature: domain Description: PRK0564 3 Location: 114 182-115274 bp Feature: gene Location: 115469-117943 bp Feature: domain Description: gyrB Location: 115499-117941 bp Feature: domain Description: gyrB Location: 1154 99-11794 1 bp Feature: gene Location: 118369-120120 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 118504-119146 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 118504 -11914 6 bp Feature: gene Location: 120215-121936 bp Feature: domain Description: YjgR Location: 120698-120962 bp Feature: domain Description: YjgR Location: 120698-120962 bp Feature: domain Description: YjgR Location: 121457-121859 bp Feature: domain Description: YjgR Location: 1214 57-121859 bp Feature: gene Location: 121929-122768 bp Feature: domain Description: SIR2_2 Location: 122103-122547 bp Feature: domain Description: SIR2_2 Location: 122103-12254 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05643 (DNA polymerase III subunit beta; Validated), gyrB (TIGR01059), RVT-Retrons, YjgR (COG0433), SIR2_2 (pfam13289)