myRT

myRT report for GCA_001993855.1_ASM199385v1

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Seq: MUVM01000145.1 Burkholderia cenocepacia strain VC5506 VC5506_contig-7000011, whole genome shotgun sequence (6248 bp)
Overview 1 RT 1: 1-2236 bp Neighborhood of RT #1 [1, 2271] RVT-GII GIIM RlpA Feature: gene Location: 1-1202 bp Ori: ONY76081.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: domain Description: GIIM Note: maturase Location: 1009-1201 bp Feature: domain Description: GIIM Note: maturase Location: 1 009-1 201 bp Feature: gene Location: 1273-1602 bp Feature: gene Location: 1660-2271 bp Ori: ONY76077.1 Feature: domain Description: RlpA Location: 1732-2236 bp Feature: domain Description: RlpA Location: 1 732-2236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RlpA (COG0797)

Seq: MUVM01000132.1 Burkholderia cenocepacia strain VC5506 VC5506_contig-8000010, whole genome shotgun sequence (272732 bp)
Overview 1 RT 1: 146176-149991 bp Neighborhood of RT #1 [146176, 149996] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 146176-146505 bp Ori: ONY77125.1 Feature: domain Description: Histone_HNS Location: 146197-146434 bp Feature: domain Description: Histone_HNS Location: 146197-146434 bp Feature: gene Location: 146652-146858 bp Feature: gene Location: 146831-148180 bp Ori: ONY77127.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147296-147932 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1472 96-147932 bp Feature: gene Location: 148434-149006 bp Ori: ONY77128.1 Feature: domain Description: FIN Location: 148620-148971 bp Feature: domain Description: FIN Location: 14862 0-148971 bp Feature: gene Location: 149241-149996 bp Ori: ONY77129.1 Feature: domain Description: his_ut_repres Location: 149319-149991 bp Feature: domain Description: his_ut_repres Location: 149319-149991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUVM01000051.1 Burkholderia cenocepacia strain VC5506 VC5506_contig-8000004, whole genome shotgun sequence (61289 bp)
Overview 1 RT 1: 32611-40988 bp Neighborhood of RT #1 [32611, 41209] PRK05643 gyrB RVT-Retrons YjgR YjgR SIR2_2 Feature: gene Location: 32611-33717 bp Ori: ONY84827.1 Feature: domain Description: PRK05643 Location: 32623-33715 bp Feature: domain Description: PRK05643 Location: 3 2623 -3 3 715 bp Feature: gene Location: 33910-36384 bp Ori: ONY84828.1 Feature: domain Description: gyrB Location: 33940-36382 bp Feature: domain Description: gyrB Location: 3 3 940-3 63 82 bp Feature: gene Location: 36810-38561 bp Ori: ONY84829.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36945-37587 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 6945-3 7587 bp Feature: gene Location: 38656-40377 bp Ori: ONY84830.1 Feature: domain Description: YjgR Location: 39139-39403 bp Feature: domain Description: YjgR Location: 3 913 9-3 9403 bp Feature: domain Description: YjgR Location: 39898-40300 bp Feature: domain Description: YjgR Location: 3 9898-403 00 bp Feature: gene Location: 40370-41209 bp Ori: ONY84831.1 Feature: domain Description: SIR2_2 Location: 40544-40988 bp Feature: domain Description: SIR2_2 Location: 40544-40988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05643 (DNA polymerase III subunit beta; Validated), gyrB (TIGR01059), RVT-Retrons, YjgR (COG0433), SIR2_2 (pfam13289)

Seq: MUVM01000142.1 Burkholderia cenocepacia strain VC5506 VC5506_contig-4000011, whole genome shotgun sequence (39229 bp)
Overview 1 RT 1: 6390-11815 bp Neighborhood of RT #1 [6390, 11835] DLH GatA RVT-GII GIIM fadh2 YvlD Feature: gene Location: 6390-7082 bp Ori: ONY76247.1 Feature: domain Description: DLH Location: 6402-7080 bp Feature: domain Description: DLH Location: 64 02-7080 bp Feature: gene Location: 7163-8641 bp Ori: ONY76278.1 Feature: domain Description: GatA Location: 7190-8618 bp Feature: domain Description: GatA Location: 7190-8618 bp Feature: gene Location: 8751-10148 bp Ori: ONY76248.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9084-9702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9084 -9702 bp Feature: domain Description: GIIM Note: maturase Location: 9753-9963 bp Feature: domain Description: GIIM Note: maturase Location: 9753-9963 bp Feature: gene Location: 10621-11451 bp Ori: ONY76249.1 Feature: domain Description: fadh2 Location: 10639-11443 bp Feature: domain Description: fadh2 Location: 10639-114 4 3 bp Feature: gene Location: 11482-11835 bp Ori: ONY76250.1 Feature: domain Description: YvlD Location: 11485-11815 bp Feature: domain Description: YvlD Location: 114 85-11815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DLH (pfam01738), GatA (COG0154), RVT-GII, GIIM (pfam08388), fadh2 (TIGR00676), YvlD (COG1950)

Seq: MUVM01000026.1 Burkholderia cenocepacia strain VC5506 VC5506_contig-2000002, whole genome shotgun sequence (118639 bp)
Overview 1 RT 1: 117277-118638 bp Neighborhood of RT #1 [117277, 118639] COG1981 RVT-GII Feature: gene Location: 117277-117693 bp Ori: ONY88032.1 Feature: domain Description: COG1981 Location: 117280-117691 bp Feature: domain Description: COG1981 Location: 117280-117691 bp Feature: gene Location: 117779-118108 bp Feature: gene Location: 118179-118639 bp Ori: ONY88038.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118512-118638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1185 12-118638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1981 (Uncharacterized membrane protein ), RVT-GII