myRT

myRT report for GCA_001993875.1_ASM199387v1

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Seq: MUVN01000012.1 Burkholderia cenocepacia strain VC13195 VC13195_contig-2000001, whole genome shotgun sequence (62128 bp)
Overview 1 RT 1: 3-5466 bp Neighborhood of RT #1 [3, 5513] RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 3-1040 bp Ori: ONZ24506.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-621 bp Feature: domain Description: GIIM Note: maturase Location: 681-882 bp Feature: domain Description: GIIM Note: maturase Location: 681 -882 bp Feature: gene Location: 1184-3646 bp Ori: ONZ24507.1 Feature: domain Description: MscK Location: 1262-3605 bp Feature: domain Description: MscK Location: 1 262-3605 bp Feature: gene Location: 4095-5513 bp Ori: ONZ24508.1 Feature: domain Description: MFS_SV2_like Location: 4215-5466 bp Feature: domain Description: MFS_SV2_like Location: 421 5-5466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)

Seq: MUVN01000020.1 Burkholderia cenocepacia strain VC13195 VC13195_contig-1000002, whole genome shotgun sequence (101078 bp)
Overview 1 RT 1: 1-3070 bp Neighborhood of RT #1 [1, 3087] PRK09409 RVT-GII TnpB_IS66 Feature: gene Location: 1-301 bp Feature: gene Location: 572-1459 bp Ori: ONZ23667.1 Feature: domain Description: PRK09409 Location: 575-1442 bp Feature: domain Description: PRK09409 Location: 575-1442 bp Feature: gene Location: 1490-2425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1901-2417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1901-2 417 bp Feature: gene Location: 2429-2751 bp Feature: gene Location: 2755-3087 bp Ori: ONZ23668.1 Feature: domain Description: TnpB_IS66 Location: 2782-3070 bp Feature: domain Description: TnpB_IS66 Location: 2 782 -3070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09409 (IS2 transposase TnpB; Reviewed), RVT-GII, TnpB_IS66 (pfam05717)

Seq: MUVN01000113.1 Burkholderia cenocepacia strain VC13195 VC13195_contig-9000010, whole genome shotgun sequence (16346 bp)
Overview 1 RT 1: 10063-16346 bp Neighborhood of RT #1 [10063, 16346] PolY_like COG4544 RVT-GII SRAP Feature: gene Location: 10063-11541 bp Ori: ONZ12007.1 Feature: domain Description: PolY_like Location: 10081-11068 bp Feature: domain Description: PolY_like Location: 10081-11068 bp Feature: gene Location: 11462-12178 bp Ori: ONZ12008.1 Feature: domain Description: COG4544 Location: 11567-12002 bp Feature: domain Description: COG4544 Location: 11567-12002 bp Feature: gene Location: 12579-14111 bp Ori: ONZ12009.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12990-13680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12990-13 680 bp Feature: gene Location: 14167-15078 bp Ori: ONZ12010.1 Feature: domain Description: SRAP Location: 14527-15043 bp Feature: domain Description: SRAP Location: 14527-15043 bp Feature: gene Location: 15774-16346 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII, SRAP (pfam02586)

Seq: MUVN01000143.1 Burkholderia cenocepacia strain VC13195 VC13195_contig-3000014, whole genome shotgun sequence (90482 bp)
Overview 1 RT 1: 40712-45295 bp Neighborhood of RT #1 [40712, 45295] D RVT-GII Feature: gene Location: 40712-41782 bp Ori: ONZ07134.1 Feature: domain Description: D Location: 40766-41750 bp Feature: domain Description: D Location: 4 0766-4 1750 bp Feature: gene Location: 41970-42266 bp Feature: gene Location: 42394-43926 bp Ori: ONZ07136.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42805-43495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 2805-4 34 95 bp Feature: gene Location: 44498-44917 bp Feature: gene Location: 45080-45295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MUVN01000053.1 Burkholderia cenocepacia strain VC13195 VC13195_contig-1000005, whole genome shotgun sequence (165028 bp)
Overview 1 RT 1: 49186-52935 bp Neighborhood of RT #1 [49186, 53006] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49186-49941 bp Ori: ONZ19314.1 Feature: domain Description: his_ut_repres Location: 49264-49936 bp Feature: domain Description: his_ut_repres Location: 49264-49936 bp Feature: gene Location: 50176-50748 bp Ori: ONZ19315.1 Feature: domain Description: FIN Location: 50362-50713 bp Feature: domain Description: FIN Location: 5 0362-5 0713 bp Feature: gene Location: 51002-52351 bp Ori: ONZ19316.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51467-52103 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5 1467-5 2103 bp Feature: gene Location: 52324-52530 bp Feature: gene Location: 52677-53006 bp Ori: ONZ19318.1 Feature: domain Description: Histone_HNS Location: 52698-52935 bp Feature: domain Description: Histone_HNS Location: 5 2698-5 2935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUVN01000052.1 Burkholderia cenocepacia strain VC13195 VC13195_contig-5, whole genome shotgun sequence (186632 bp)
Overview 1 RT 1: 161512-167155 bp Neighborhood of RT #1 [161512, 167190] FACL_FadD13-like AcrR RVT-GII Spo0J DUF932 Feature: gene Location: 161512-163077 bp Ori: ONZ19700.1 Feature: domain Description: FACL_FadD13-like Location: 161542-163027 bp Feature: domain Description: FACL_FadD13-like Location: 16 1542-16 3027 bp Feature: gene Location: 163301-163996 bp Ori: ONZ19701.1 Feature: domain Description: AcrR Location: 163325-163808 bp Feature: domain Description: AcrR Location: 16 3325-16 3808 bp Feature: gene Location: 164095-164310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164140-164305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 4140-16 4305 bp Feature: gene Location: 164282-166300 bp Feature: domain Description: Spo0J Location: 164447-165323 bp Feature: domain Description: Spo0J Location: 16 4447-16 5323 bp Feature: gene Location: 166366-167190 bp Ori: ONZ19702.1 Feature: domain Description: DUF932 Location: 166474-167155 bp Feature: domain Description: DUF932 Location: 16 6 474-16 7155 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FACL_FadD13-like (cd17631), AcrR (COG1309), RVT-GII, Spo0J (COG1475), DUF932 (pfam06067)

Seq: MUVN01000114.1 Burkholderia cenocepacia strain VC13195 VC13195_contig-10000010, whole genome shotgun sequence (262256 bp)
Overview 1 RT 1: 7-5291 bp Neighborhood of RT #1 [7, 5305] COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 7-306 bp Feature: gene Location: 615-1649 bp Ori: ONZ11627.1 Feature: domain Description: COG3547 Location: 630-1593 bp Feature: domain Description: COG3547 Location: 630-1593 bp Feature: gene Location: 1820-3187 bp Ori: ONZ11628.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2153-2768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2153-27 68 bp Feature: domain Description: GIIM Note: maturase Location: 2828-3029 bp Feature: domain Description: GIIM Note: maturase Location: 2828-3029 bp Feature: gene Location: 3307-4272 bp Ori: ONZ11629.1 Feature: domain Description: GDP_MD_SDR_e Location: 3343-4240 bp Feature: domain Description: GDP_MD_SDR_e Location: 3343-4240 bp Feature: gene Location: 4259-5305 bp Ori: ONZ11630.1 Feature: domain Description: Gmd Location: 4274-5291 bp Feature: domain Description: Gmd Location: 427 4-5291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089)