myRT

myRT report for GCA_001993895.1_ASM199389v1

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Seq: MUVQ01000223.1 Burkholderia cenocepacia strain VC14309 VC14309_contig-4000014, whole genome shotgun sequence (5902 bp)
Overview 1 RT 1: 1833-5450 bp Neighborhood of RT #1 [1833, 5881] PolY_like COG4544 RVT-GII Feature: gene Location: 1833-3311 bp Ori: ONZ49947.1 Feature: domain Description: PolY_like Location: 1851-2838 bp Feature: domain Description: PolY_like Location: 1 851 -2838 bp Feature: gene Location: 3232-3948 bp Ori: ONZ49948.1 Feature: domain Description: COG4544 Location: 3337-3772 bp Feature: domain Description: COG4544 Location: 3337-3772 bp Feature: gene Location: 4349-5881 bp Ori: ONZ49949.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4760-5450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4760-5450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII

Seq: MUVQ01000191.1 Burkholderia cenocepacia strain VC14309 VC14309_contig-12, whole genome shotgun sequence (140713 bp)
Overview 1 RT 1: 136698-140708 bp Neighborhood of RT #1 [136698, 140713] Gmd GDP_MD_SDR_e RVT-GII GIIM COG3547 Feature: gene Location: 136698-137744 bp Ori: ONZ54095.1 Feature: domain Description: Gmd Location: 136713-137730 bp Feature: domain Description: Gmd Location: 136713-137730 bp Feature: gene Location: 137731-138696 bp Ori: ONZ54096.1 Feature: domain Description: GDP_MD_SDR_e Location: 137767-138664 bp Feature: domain Description: GDP_MD_SDR_e Location: 137767-138664 bp Feature: gene Location: 138816-140183 bp Ori: ONZ54097.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139149-139764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139149-139764 bp Feature: domain Description: GIIM Note: maturase Location: 139824-140025 bp Feature: domain Description: GIIM Note: maturase Location: 13982 4-14002 5 bp Feature: gene Location: 140354-140713 bp Ori: ONZ54098.1 Feature: domain Description: COG3547 Location: 140369-140708 bp Feature: domain Description: COG3547 Location: 140369-140708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUVQ01000124.1 Burkholderia cenocepacia strain VC14309 VC14309_contig-6000007, whole genome shotgun sequence (176249 bp)
Overview 1 RT 1: 57049-60798 bp Neighborhood of RT #1 [57049, 60869] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 57049-57804 bp Ori: ONZ60053.1 Feature: domain Description: his_ut_repres Location: 57127-57799 bp Feature: domain Description: his_ut_repres Location: 57127-57799 bp Feature: gene Location: 58039-58611 bp Ori: ONZ60054.1 Feature: domain Description: FIN Location: 58225-58576 bp Feature: domain Description: FIN Location: 58225-58576 bp Feature: gene Location: 58865-60214 bp Ori: ONZ60055.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59330-59966 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 593 3 0-59966 bp Feature: gene Location: 60187-60393 bp Feature: gene Location: 60540-60869 bp Ori: ONZ60057.1 Feature: domain Description: Histone_HNS Location: 60561-60798 bp Feature: domain Description: Histone_HNS Location: 60561-60798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUVQ01000248.1 Burkholderia cenocepacia strain VC14309 VC14309_contig-20000015, whole genome shotgun sequence (71708 bp)
Overview 1 RT 1: 67158-70908 bp Neighborhood of RT #1 [67158, 71339] SRAP RVT-GII Feature: gene Location: 67158-68144 bp Feature: gene Location: 68840-69751 bp Ori: ONZ47838.1 Feature: domain Description: SRAP Location: 69200-69716 bp Feature: domain Description: SRAP Location: 69200-69716 bp Feature: gene Location: 69807-71339 bp Ori: ONZ47839.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70218-70908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70218-70908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MUVQ01000095.1 Burkholderia cenocepacia strain VC14309 VC14309_contig-11000005, whole genome shotgun sequence (148884 bp)
Overview 1 RT 1: 100164-107770 bp Neighborhood of RT #1 [100164, 107817] COG3547 RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 100164-100463 bp Feature: gene Location: 100772-101806 bp Ori: ONZ63405.1 Feature: domain Description: COG3547 Location: 100787-101750 bp Feature: domain Description: COG35 47 Location: 100787-10175 0 bp Feature: gene Location: 101977-103344 bp Ori: ONZ63406.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102310-102925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102310-102925 bp Feature: domain Description: GIIM Note: maturase Location: 102985-103186 bp Feature: domain Description: GIIM Note: maturase Location: 102985 -103186 bp Feature: gene Location: 103488-105950 bp Ori: ONZ63407.1 Feature: domain Description: MscK Location: 103566-105909 bp Feature: domain Description: MscK Location: 1035 66-105 909 bp Feature: gene Location: 106399-107817 bp Ori: ONZ63408.1 Feature: domain Description: MFS_SV2_like Location: 106519-107770 bp Feature: domain Description: MFS_SV2_like Location: 1065 19-107770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)

Seq: MUVQ01000250.1 Burkholderia cenocepacia strain VC14309 VC14309_contig-22000015, whole genome shotgun sequence (175386 bp)
Overview 1 RT 1: 19443-25071 bp Neighborhood of RT #1 [19443, 25121] DUF932 Spo0J RVT-GII AcrR FACL_FadD13-like Feature: gene Location: 19443-20267 bp Ori: ONZ47340.1 Feature: domain Description: DUF932 Location: 19551-20232 bp Feature: domain Description: DUF932 Location: 19551-20232 bp Feature: gene Location: 20333-22351 bp Feature: domain Description: Spo0J Location: 20498-21374 bp Feature: domain Description: Spo0J Location: 20498-21374 bp Feature: gene Location: 22323-22538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22368-22533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2236 8-22533 bp Feature: gene Location: 22637-23332 bp Ori: ONZ47341.1 Feature: domain Description: AcrR Location: 22661-23144 bp Feature: domain Description: AcrR Location: 226 6 1-23144 bp Feature: gene Location: 23556-25121 bp Ori: ONZ47342.1 Feature: domain Description: FACL_FadD13-like Location: 23586-25071 bp Feature: domain Description: FACL_FadD13-like Location: 23586 -25071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), Spo0J (COG1475), RVT-GII, AcrR (COG1309), FACL_FadD13-like (cd17631)

Seq: MUVQ01000108.1 Burkholderia cenocepacia strain VC14309 VC14309_contig-4000006, whole genome shotgun sequence (99940 bp)
Overview 1 RT 1: 97911-99923 bp Neighborhood of RT #1 [97911, 99940] TnpB_IS66 RVT-GII PRK14702 Feature: gene Location: 97911-98243 bp Ori: ONZ61700.1 Feature: domain Description: TnpB_IS66 Location: 97938-98226 bp Feature: domain Description: TnpB_IS66 Location: 97 938-98226 bp Feature: gene Location: 98247-98569 bp Feature: gene Location: 98573-99508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98984-99500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98984-99500 bp Feature: gene Location: 99539-99940 bp Ori: ONZ61701.1 Feature: domain Description: PRK14702 Location: 99542-99923 bp Feature: domain Description: PRK147 02 Location: 99542-99923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, PRK14702 (insertion element IS2 transposase InsD; Provisional)

Seq: MUVQ01000035.1 Burkholderia cenocepacia strain VC14309 VC14309_contig-1000002, whole genome shotgun sequence (61413 bp)
Overview 1 RT 1: 11643-16226 bp Neighborhood of RT #1 [11643, 16226] D RVT-GII Feature: gene Location: 11643-12713 bp Ori: ONZ69845.1 Feature: domain Description: D Location: 11697-12681 bp Feature: domain Description: D Location: 11697-1268 1 bp Feature: gene Location: 12901-13197 bp Feature: gene Location: 13325-14857 bp Ori: ONZ69847.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13736-14426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13736-14426 bp Feature: gene Location: 15429-15848 bp Feature: gene Location: 16011-16226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII