myRT

myRT report for GCA_001993905.1_ASM199390v1

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Seq: MUVR01000041.1 Burkholderia cenocepacia strain VC14715 VC14715_contig-9000003, whole genome shotgun sequence (64543 bp)
Overview 1 RT 1: 7-7613 bp Neighborhood of RT #1 [7, 7660] COG3547 RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 7-306 bp Feature: gene Location: 615-1649 bp Ori: ONZ72805.1 Feature: domain Description: COG3547 Location: 630-1593 bp Feature: domain Description: COG3547 Location: 630-1 593 bp Feature: gene Location: 1820-3187 bp Ori: ONZ72806.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2153-2768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 53-2768 bp Feature: domain Description: GIIM Note: maturase Location: 2828-3029 bp Feature: domain Description: GIIM Note: maturase Location: 2828-3029 bp Feature: gene Location: 3331-5793 bp Ori: ONZ72807.1 Feature: domain Description: MscK Location: 3409-5752 bp Feature: domain Description: MscK Location: 3409-5752 bp Feature: gene Location: 6242-7660 bp Ori: ONZ72808.1 Feature: domain Description: MFS_SV2_like Location: 6362-7613 bp Feature: domain Description: MFS_SV2_like Location: 6362-761 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)

Seq: MUVR01000064.1 Burkholderia cenocepacia strain VC14715 VC14715_contig-4000006, whole genome shotgun sequence (100332 bp)
Overview 1 RT 1: 97997-100306 bp Neighborhood of RT #1 [97997, 100326] TnpB_IS66 RVT-GII PRK14702 Feature: gene Location: 97997-98329 bp Ori: ONZ69533.1 Feature: domain Description: TnpB_IS66 Location: 98024-98312 bp Feature: domain Description: TnpB_IS66 Location: 9802 4-98312 bp Feature: gene Location: 98333-98655 bp Feature: gene Location: 98659-99594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99070-99586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99070-99586 bp Feature: gene Location: 99625-100326 bp Ori: ONZ69534.1 Feature: domain Description: PRK14702 Location: 99628-100306 bp Feature: domain Description: PRK14702 Location: 9962 8-100306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, PRK14702 (insertion element IS2 transposase InsD; Provisional)

Seq: MUVR01000052.1 Burkholderia cenocepacia strain VC14715 VC14715_contig-5, whole genome shotgun sequence (169008 bp)
Overview 1 RT 1: 49153-52902 bp Neighborhood of RT #1 [49153, 52973] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49153-49908 bp Ori: ONZ71134.1 Feature: domain Description: his_ut_repres Location: 49231-49903 bp Feature: domain Description: his_ut_repres Location: 4923 1-49903 bp Feature: gene Location: 50143-50715 bp Ori: ONZ71135.1 Feature: domain Description: FIN Location: 50329-50680 bp Feature: domain Description: FIN Location: 503 29-50680 bp Feature: gene Location: 50969-52318 bp Ori: ONZ71136.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51434-52070 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5143 4-52070 bp Feature: gene Location: 52291-52497 bp Feature: gene Location: 52644-52973 bp Ori: ONZ71138.1 Feature: domain Description: Histone_HNS Location: 52665-52902 bp Feature: domain Description: Histone_HNS Location: 52665-52902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUVR01000034.1 Burkholderia cenocepacia strain VC14715 VC14715_contig-2000003, whole genome shotgun sequence (184187 bp)
Overview 1 RT 1: 45187-49738 bp Neighborhood of RT #1 [45187, 49770] RVT-GII D Feature: gene Location: 45187-45402 bp Feature: gene Location: 45565-45984 bp Feature: gene Location: 46556-48088 bp Ori: ONZ73377.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46967-47657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 6967-4 7657 bp Feature: gene Location: 48216-48512 bp Feature: gene Location: 48700-49770 bp Ori: ONZ73379.1 Feature: domain Description: D Location: 48754-49738 bp Feature: domain Description: D Location: 4 8754 -4 9738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, D (PHA02561)

Seq: MUVR01000129.1 Burkholderia cenocepacia strain VC14715 VC14715_contig-12, whole genome shotgun sequence (183674 bp)
Overview 1 RT 1: 166-3637 bp Neighborhood of RT #1 [166, 3651] RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 166-1533 bp Ori: ONZ62159.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: gene Location: 1653-2618 bp Ori: ONZ62160.1 Feature: domain Description: GDP_MD_SDR_e Location: 1689-2586 bp Feature: domain Description: GDP_MD_SDR_e Location: 1689-25 86 bp Feature: gene Location: 2605-3651 bp Ori: ONZ62161.1 Feature: domain Description: Gmd Location: 2620-3637 bp Feature: domain Description: Gmd Location: 2620-3637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089)

Seq: MUVR01000148.1 Burkholderia cenocepacia strain VC14715 VC14715_contig-2000014, whole genome shotgun sequence (185304 bp)
Overview 1 RT 1: 160410-166053 bp Neighborhood of RT #1 [160410, 166088] FACL_FadD13-like AcrR RVT-GII Spo0J DUF932 Feature: gene Location: 160410-161975 bp Ori: ONZ59283.1 Feature: domain Description: FACL_FadD13-like Location: 160440-161925 bp Feature: domain Description: FACL_FadD13-like Location: 16 0440-16 1925 bp Feature: gene Location: 162199-162894 bp Ori: ONZ59284.1 Feature: domain Description: AcrR Location: 162223-162706 bp Feature: domain Description: AcrR Location: 16 2223-16 2706 bp Feature: gene Location: 162993-163208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163038-163203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 3038-16 3203 bp Feature: gene Location: 163180-165198 bp Feature: domain Description: Spo0J Location: 163345-164221 bp Feature: domain Description: Spo0J Location: 16 3345-16 4221 bp Feature: gene Location: 165264-166088 bp Ori: ONZ59285.1 Feature: domain Description: DUF932 Location: 165372-166053 bp Feature: domain Description: DUF932 Location: 16 5372-16 6 053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FACL_FadD13-like (cd17631), AcrR (COG1309), RVT-GII, Spo0J (COG1475), DUF932 (pfam06067)

Seq: MUVR01000060.1 Burkholderia cenocepacia strain VC14715 VC14715_contig-6, whole genome shotgun sequence (71777 bp)
Overview 1 RT 1: 370-4551 bp Neighborhood of RT #1 [370, 4551] RVT-GII SRAP Feature: gene Location: 370-1902 bp Ori: ONZ69902.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781-1471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 81-147 1 bp Feature: gene Location: 1958-2869 bp Ori: ONZ69903.1 Feature: domain Description: SRAP Location: 2318-2834 bp Feature: domain Description: SRAP Location: 2318-2834 bp Feature: gene Location: 3565-4551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SRAP (pfam02586)

Seq: MUVR01000113.1 Burkholderia cenocepacia strain VC14715 VC14715_contig-9000010, whole genome shotgun sequence (14132 bp)
Overview 1 RT 1: 10063-13680 bp Neighborhood of RT #1 [10063, 14111] PolY_like COG4544 RVT-GII Feature: gene Location: 10063-11541 bp Ori: ONZ64110.1 Feature: domain Description: PolY_like Location: 10081-11068 bp Feature: domain Description: PolY_like Location: 1008 1-11068 bp Feature: gene Location: 11462-12178 bp Ori: ONZ64111.1 Feature: domain Description: COG4544 Location: 11567-12002 bp Feature: domain Description: COG4544 Location: 11567-12002 bp Feature: gene Location: 12579-14111 bp Ori: ONZ64112.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12990-13680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12990-1368 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII