myRT

myRT report for GCA_001993925.1_ASM199392v1

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Seq: MUVS01000100.1 Burkholderia cenocepacia strain VC15185 VC15185_contig-8, whole genome shotgun sequence (62925 bp)
Overview 1 RT 1: 370-4551 bp Neighborhood of RT #1 [370, 4551] RVT-GII SRAP Feature: gene Location: 370-1902 bp Ori: ONZ25347.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781-1471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781 -1 471 bp Feature: gene Location: 1958-2869 bp Ori: ONZ25348.1 Feature: domain Description: SRAP Location: 2318-2834 bp Feature: domain Description: SRAP Location: 231 8-2834 bp Feature: gene Location: 3565-4551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SRAP (pfam02586)

Seq: MUVS01000197.1 Burkholderia cenocepacia strain VC15185 VC15185_contig-16000014, whole genome shotgun sequence (19236 bp)
Overview 1 RT 1: 11674-16931 bp Neighborhood of RT #1 [11674, 17404] D RVT-GII COG4544 PolY_like Feature: gene Location: 11674-12744 bp Ori: ONZ14013.1 Feature: domain Description: D Location: 11728-12712 bp Feature: domain Description: D Location: 1172 8-12 712 bp Feature: gene Location: 12932-13228 bp Feature: gene Location: 13356-14888 bp Ori: ONZ14015.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13767-14457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13767-14457 bp Feature: gene Location: 15289-16005 bp Ori: ONZ14016.1 Feature: domain Description: COG4544 Location: 15394-15829 bp Feature: domain Description: COG4544 Location: 15394-1582 9 bp Feature: gene Location: 15926-17404 bp Ori: ONZ14017.1 Feature: domain Description: PolY_like Location: 15944-16931 bp Feature: domain Description: PolY_like Location: 15944-16931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII, COG4544 (Uncharacterized conserved protein ), PolY_like (cd03468)

Seq: MUVS01000071.1 Burkholderia cenocepacia strain VC15185 VC15185_contig-5, whole genome shotgun sequence (164222 bp)
Overview 1 RT 1: 48904-52653 bp Neighborhood of RT #1 [48904, 52724] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 48904-49659 bp Ori: ONZ29288.1 Feature: domain Description: his_ut_repres Location: 48982-49654 bp Feature: domain Description: his_ut_repres Location: 48982-49654 bp Feature: gene Location: 49894-50466 bp Ori: ONZ29289.1 Feature: domain Description: FIN Location: 50080-50431 bp Feature: domain Description: FIN Location: 50080-5043 1 bp Feature: gene Location: 50720-52069 bp Ori: ONZ29290.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51185-51821 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51185-51821 bp Feature: gene Location: 52042-52248 bp Feature: gene Location: 52395-52724 bp Ori: ONZ29292.1 Feature: domain Description: Histone_HNS Location: 52416-52653 bp Feature: domain Description: Histone_HNS Location: 52416-52653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUVS01000033.1 Burkholderia cenocepacia strain VC15185 VC15185_contig-3000002, whole genome shotgun sequence (100171 bp)
Overview 1 RT 1: 1-2245 bp Neighborhood of RT #1 [1, 2262] RVT-GII TnpB_IS66 Feature: gene Location: 1-634 bp Feature: gene Location: 665-1600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1076-1592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1076-1592 bp Feature: gene Location: 1604-1926 bp Feature: gene Location: 1930-2262 bp Ori: ONZ33648.1 Feature: domain Description: TnpB_IS66 Location: 1957-2245 bp Feature: domain Description: TnpB_IS66 Location: 1957-224 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TnpB_IS66 (pfam05717)

Seq: MUVS01000196.1 Burkholderia cenocepacia strain VC15185 VC15185_contig-14000014, whole genome shotgun sequence (198683 bp)
Overview 1 RT 1: 180025-185323 bp Neighborhood of RT #1 [180025, 185323] Gmd GDP_MD_SDR_e RVT-GII GIIM COG3547 Feature: gene Location: 180025-181071 bp Ori: ONZ14192.1 Feature: domain Description: Gmd Location: 180040-181057 bp Feature: domain Description: Gmd Location: 180040-18105 7 bp Feature: gene Location: 181058-182023 bp Ori: ONZ14193.1 Feature: domain Description: GDP_MD_SDR_e Location: 181094-181991 bp Feature: domain Description: GDP_MD_SDR_e Location: 181094-181991 bp Feature: gene Location: 182143-183510 bp Ori: ONZ14194.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182476-183091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182476-183091 bp Feature: domain Description: GIIM Note: maturase Location: 183151-183352 bp Feature: domain Description: GIIM Note: maturase Location: 18315 1-18335 2 bp Feature: gene Location: 183681-184715 bp Ori: ONZ14195.1 Feature: domain Description: COG3547 Location: 183696-184659 bp Feature: domain Description: COG35 47 Location: 183696-18465 9 bp Feature: gene Location: 185024-185323 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUVS01000050.1 Burkholderia cenocepacia strain VC15185 VC15185_contig-4000003, whole genome shotgun sequence (35495 bp)
Overview 1 RT 1: 166-5959 bp Neighborhood of RT #1 [166, 6006] RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 166-1533 bp Ori: ONZ31943.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: gene Location: 1677-4139 bp Ori: ONZ31944.1 Feature: domain Description: MscK Location: 1755-4098 bp Feature: domain Description: MscK Location: 1755-4098 bp Feature: gene Location: 4588-6006 bp Ori: ONZ31945.1 Feature: domain Description: MFS_SV2_like Location: 4708-5959 bp Feature: domain Description: MFS_SV2_like Location: 4708-5959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)

Seq: MUVS01000123.1 Burkholderia cenocepacia strain VC15185 VC15185_contig-3000009, whole genome shotgun sequence (48109 bp)
Overview 1 RT 1: 22-2923 bp Neighborhood of RT #1 [22, 2923] RVT-GII Feature: gene Location: 22-1554 bp Ori: ONZ22866.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1123 bp Feature: gene Location: 2126-2545 bp Feature: gene Location: 2708-2923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MUVS01000018.1 Burkholderia cenocepacia strain VC15185 VC15185_contig-17000000, whole genome shotgun sequence (177025 bp)
Overview 1 RT 1: 19443-25071 bp Neighborhood of RT #1 [19443, 25121] DUF932 Spo0J RVT-GII AcrR FACL_FadD13-like Feature: gene Location: 19443-20267 bp Ori: ONZ35519.1 Feature: domain Description: DUF932 Location: 19551-20232 bp Feature: domain Description: DUF932 Location: 19551-20232 bp Feature: gene Location: 20333-22351 bp Feature: domain Description: Spo0J Location: 20498-21374 bp Feature: domain Description: Spo0J Location: 20498 -21374 bp Feature: gene Location: 22323-22538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22368-22533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22368 -22533 bp Feature: gene Location: 22637-23332 bp Ori: ONZ35520.1 Feature: domain Description: AcrR Location: 22661-23144 bp Feature: domain Description: AcrR Location: 22661-23144 bp Feature: gene Location: 23556-25121 bp Ori: ONZ35521.1 Feature: domain Description: FACL_FadD13-like Location: 23586-25071 bp Feature: domain Description: FACL_FadD13-like Location: 2358 6-25071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), Spo0J (COG1475), RVT-GII, AcrR (COG1309), FACL_FadD13-like (cd17631)