myRT

myRT report for GCA_001993945.1_ASM199394v1

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Seq: MUVT01000026.1 Burkholderia cenocepacia strain VC15442 VC15442_contig-14000001, whole genome shotgun sequence (207614 bp)
Overview 1 RT 1: 49154-52903 bp Neighborhood of RT #1 [49154, 52974] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49154-49909 bp Ori: ONZ57186.1 Feature: domain Description: his_ut_repres Location: 49232-49904 bp Feature: domain Description: his_ut_repres Location: 49232-49904 bp Feature: gene Location: 50144-50716 bp Ori: ONZ57187.1 Feature: domain Description: FIN Location: 50330-50681 bp Feature: domain Description: FIN Location: 50330-50681 bp Feature: gene Location: 50970-52319 bp Ori: ONZ57188.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51435-52071 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51 435-52071 bp Feature: gene Location: 52292-52498 bp Feature: gene Location: 52645-52974 bp Ori: ONZ57190.1 Feature: domain Description: Histone_HNS Location: 52666-52903 bp Feature: domain Description: Histone_HNS Location: 52666-52903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUVT01000095.1 Burkholderia cenocepacia strain VC15442 VC15442_contig-11000007, whole genome shotgun sequence (181181 bp)
Overview 1 RT 1: 156334-161977 bp Neighborhood of RT #1 [156334, 162012] FACL_FadD13-like AcrR RVT-GII Spo0J DUF932 Feature: gene Location: 156334-157899 bp Ori: ONZ48767.1 Feature: domain Description: FACL_FadD13-like Location: 156364-157849 bp Feature: domain Description: FACL_FadD13-like Location: 156364-157849 bp Feature: gene Location: 158123-158818 bp Ori: ONZ48768.1 Feature: domain Description: AcrR Location: 158147-158630 bp Feature: domain Description: AcrR Location: 158147-158630 bp Feature: gene Location: 158917-159132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158962-159127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158962 -15912 7 bp Feature: gene Location: 159104-161122 bp Feature: domain Description: Spo0J Location: 159269-160145 bp Feature: domain Description: Spo0J Location: 1592 69-160145 bp Feature: gene Location: 161188-162012 bp Ori: ONZ48769.1 Feature: domain Description: DUF932 Location: 161296-161977 bp Feature: domain Description: DUF932 Location: 1612 96-161977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FACL_FadD13-like (cd17631), AcrR (COG1309), RVT-GII, Spo0J (COG1475), DUF932 (pfam06067)

Seq: MUVT01000153.1 Burkholderia cenocepacia strain VC15442 VC15442_contig-3000013, whole genome shotgun sequence (22147 bp)
Overview 1 RT 1: 18078-21695 bp Neighborhood of RT #1 [18078, 22126] PolY_like COG4544 RVT-GII Feature: gene Location: 18078-19556 bp Ori: ONZ41382.1 Feature: domain Description: PolY_like Location: 18096-19083 bp Feature: domain Description: PolY_like Location: 18096-19083 bp Feature: gene Location: 19477-20193 bp Ori: ONZ41383.1 Feature: domain Description: COG4544 Location: 19582-20017 bp Feature: domain Description: COG4544 Location: 19582-20017 bp Feature: gene Location: 20594-22126 bp Ori: ONZ41384.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21005-21695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21005-21695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII

Seq: MUVT01000077.1 Burkholderia cenocepacia strain VC15442 VC15442_contig-6, whole genome shotgun sequence (72025 bp)
Overview 1 RT 1: 370-4551 bp Neighborhood of RT #1 [370, 4551] RVT-GII SRAP Feature: gene Location: 370-1902 bp Ori: ONZ51350.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781-1471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781-14 71 bp Feature: gene Location: 1958-2869 bp Ori: ONZ51351.1 Feature: domain Description: SRAP Location: 2318-2834 bp Feature: domain Description: SRAP Location: 2318-2834 bp Feature: gene Location: 3565-4551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SRAP (pfam02586)

Seq: MUVT01000108.1 Burkholderia cenocepacia strain VC15442 VC15442_contig-2000009, whole genome shotgun sequence (48108 bp)
Overview 1 RT 1: 22-2923 bp Neighborhood of RT #1 [22, 2923] RVT-GII Feature: gene Location: 22-1554 bp Ori: ONZ47031.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1123 bp Feature: gene Location: 2126-2545 bp Feature: gene Location: 2708-2923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MUVT01000073.1 Burkholderia cenocepacia strain VC15442 VC15442_contig-3000005, whole genome shotgun sequence (15253 bp)
Overview 1 RT 1: 11670-14453 bp Neighborhood of RT #1 [11670, 14884] D RVT-GII Feature: gene Location: 11670-12740 bp Ori: ONZ51663.1 Feature: domain Description: D Location: 11724-12708 bp Feature: domain Description: D Location: 11724-12708 bp Feature: gene Location: 12928-13224 bp Feature: gene Location: 13352-14884 bp Ori: ONZ51665.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13763-14453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1376 3-14453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MUVT01000088.1 Burkholderia cenocepacia strain VC15442 VC15442_contig-4000007, whole genome shotgun sequence (34987 bp)
Overview 1 RT 1: 1-2245 bp Neighborhood of RT #1 [1, 2262] RVT-GII TnpB_IS66 Feature: gene Location: 1-634 bp Feature: gene Location: 665-1600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1076-1592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107 6-1592 bp Feature: gene Location: 1604-1926 bp Feature: gene Location: 1930-2262 bp Ori: ONZ49534.1 Feature: domain Description: TnpB_IS66 Location: 1957-2245 bp Feature: domain Description: TnpB_IS66 Location: 1957 -2245 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TnpB_IS66 (pfam05717)

Seq: MUVT01000141.1 Burkholderia cenocepacia strain VC15442 VC15442_contig-12, whole genome shotgun sequence (260553 bp)
Overview 1 RT 1: 125-3596 bp Neighborhood of RT #1 [125, 3610] RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 125-1492 bp Ori: ONZ42933.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458-1073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458 -1073 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1334 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1334 bp Feature: gene Location: 1612-2577 bp Ori: ONZ42934.1 Feature: domain Description: GDP_MD_SDR_e Location: 1648-2545 bp Feature: domain Description: GDP_MD_SDR_e Location: 1648 -2545 bp Feature: gene Location: 2564-3610 bp Ori: ONZ42935.1 Feature: domain Description: Gmd Location: 2579-3596 bp Feature: domain Description: Gmd Location: 2579-3596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089)