myRT

myRT report for GCA_001993975.1_ASM199397v1

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Seq: MUVU01000046.1 Burkholderia cenocepacia strain VC6356 VC6356_contig-4000006, whole genome shotgun sequence (12310 bp)
Overview 1 RT 1: 8241-11858 bp Neighborhood of RT #1 [8241, 12289] PolY_like COG4544 RVT-GII Feature: gene Location: 8241-9719 bp Ori: ONZ39283.1 Feature: domain Description: PolY_like Location: 8259-9246 bp Feature: domain Description: PolY_like Location: 8259-9246 bp Feature: gene Location: 9640-10356 bp Ori: ONZ39284.1 Feature: domain Description: COG4544 Location: 9745-10180 bp Feature: domain Description: COG4544 Location: 9745-1 01 80 bp Feature: gene Location: 10757-12289 bp Ori: ONZ39285.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11168-11858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 68-1 1 858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII

Seq: MUVU01000103.1 Burkholderia cenocepacia strain VC6356 VC6356_contig-6000012, whole genome shotgun sequence (33862 bp)
Overview 1 RT 1: 166-3637 bp Neighborhood of RT #1 [166, 3651] RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 166-1533 bp Ori: ONZ32319.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: gene Location: 1653-2618 bp Ori: ONZ32320.1 Feature: domain Description: GDP_MD_SDR_e Location: 1689-2586 bp Feature: domain Description: GDP_MD_SDR_e Location: 1689-2 586 bp Feature: gene Location: 2605-3651 bp Ori: ONZ32321.1 Feature: domain Description: Gmd Location: 2620-3637 bp Feature: domain Description: Gmd Location: 2 62 0-3637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089)

Seq: MUVU01000092.1 Burkholderia cenocepacia strain VC6356 VC6356_contig-11, whole genome shotgun sequence (71925 bp)
Overview 1 RT 1: 67375-71125 bp Neighborhood of RT #1 [67375, 71556] SRAP RVT-GII Feature: gene Location: 67375-68361 bp Feature: gene Location: 69057-69968 bp Ori: ONZ34601.1 Feature: domain Description: SRAP Location: 69417-69933 bp Feature: domain Description: SRAP Location: 69417-6993 3 bp Feature: gene Location: 70024-71556 bp Ori: ONZ34602.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70435-71125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7043 5-71125 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MUVU01000066.1 Burkholderia cenocepacia strain VC6356 VC6356_contig-12000007, whole genome shotgun sequence (211149 bp)
Overview 1 RT 1: 49185-52934 bp Neighborhood of RT #1 [49185, 53005] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49185-49940 bp Ori: ONZ37652.1 Feature: domain Description: his_ut_repres Location: 49263-49935 bp Feature: domain Description: his_ut_repres Location: 4 9263-4 9935 bp Feature: gene Location: 50175-50747 bp Ori: ONZ37653.1 Feature: domain Description: FIN Location: 50361-50712 bp Feature: domain Description: FIN Location: 50361-50712 bp Feature: gene Location: 51001-52350 bp Ori: ONZ37654.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51466-52102 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 514 66-52102 bp Feature: gene Location: 52323-52529 bp Feature: gene Location: 52676-53005 bp Ori: ONZ37656.1 Feature: domain Description: Histone_HNS Location: 52697-52934 bp Feature: domain Description: Histone_HNS Location: 52697-52934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUVU01000065.1 Burkholderia cenocepacia strain VC6356 VC6356_contig-11000007, whole genome shotgun sequence (17000 bp)
Overview 1 RT 1: 54-1617 bp Neighborhood of RT #1 [54, 1634] HTH_Tnp_1 RVT-GII TnpB_IS66 Feature: gene Location: 54-317 bp Ori: ONZ37875.1 Feature: domain Description: HTH_Tnp_1 Location: 60-264 bp Feature: domain Description: HTH_Tnp_1 Location: 60-264 bp Feature: gene Location: 385-972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 796-964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 796-964 bp Feature: gene Location: 976-1298 bp Feature: gene Location: 1302-1634 bp Ori: ONZ37876.1 Feature: domain Description: TnpB_IS66 Location: 1329-1617 bp Feature: domain Description: TnpB_IS66 Location: 1329-1617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-GII, TnpB_IS66 (pfam05717)

Seq: MUVU01000026.1 Burkholderia cenocepacia strain VC6356 VC6356_contig-3000003, whole genome shotgun sequence (137998 bp)
Overview 1 RT 1: 370-3552 bp Neighborhood of RT #1 [370, 3584] RVT-GII D Feature: gene Location: 370-1902 bp Ori: ONZ42475.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781-1471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781-1471 bp Feature: gene Location: 2030-2326 bp Feature: gene Location: 2514-3584 bp Ori: ONZ42477.1 Feature: domain Description: D Location: 2568-3552 bp Feature: domain Description: D Location: 256 8-3552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, D (PHA02561)

Seq: MUVU01000123.1 Burkholderia cenocepacia strain VC6356 VC6356_contig-7000014, whole genome shotgun sequence (2098 bp)
Overview 1 RT 1: 205-2066 bp Neighborhood of RT #1 [205, 2098] PRK09409 RVT-GII Tra5 Feature: gene Location: 205-1092 bp Ori: ONZ29418.1 Feature: domain Description: PRK09409 Location: 208-1075 bp Feature: domain Description: PRK09409 Location: 208-107 5 bp Feature: gene Location: 1084-1473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1108-1429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1108-1429 bp Feature: gene Location: 1523-2098 bp Ori: ONZ29419.1 Feature: domain Description: Tra5 Location: 1562-2066 bp Feature: domain Description: Tra5 Location: 1562-2066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09409 (IS2 transposase TnpB; Reviewed), RVT-GII, Tra5 (COG2801)

Seq: MUVU01000078.1 Burkholderia cenocepacia strain VC6356 VC6356_contig-2000009, whole genome shotgun sequence (47487 bp)
Overview 1 RT 1: 22-2923 bp Neighborhood of RT #1 [22, 2923] RVT-GII Feature: gene Location: 22-1554 bp Ori: ONZ36365.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1123 bp Feature: gene Location: 2126-2545 bp Feature: gene Location: 2708-2923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MUVU01000041.1 Burkholderia cenocepacia strain VC6356 VC6356_contig-2000005, whole genome shotgun sequence (95934 bp)
Overview 1 RT 1: 31482-39088 bp Neighborhood of RT #1 [31482, 39135] COG3547 RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 31482-31781 bp Feature: gene Location: 32090-33124 bp Ori: ONZ39869.1 Feature: domain Description: COG3547 Location: 32105-33068 bp Feature: domain Description: COG3547 Location: 32105-33068 bp Feature: gene Location: 33295-34662 bp Ori: ONZ39870.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33628-34243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33628-34243 bp Feature: domain Description: GIIM Note: maturase Location: 34303-34504 bp Feature: domain Description: GIIM Note: maturase Location: 34303-34504 bp Feature: gene Location: 34806-37268 bp Ori: ONZ39871.1 Feature: domain Description: MscK Location: 34884-37227 bp Feature: domain Description: MscK Location: 34884-37227 bp Feature: gene Location: 37717-39135 bp Ori: ONZ39872.1 Feature: domain Description: MFS_SV2_like Location: 37837-39088 bp Feature: domain Description: MFS_SV2_like Location: 37837-39 088 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)