myRT

myRT report for GCA_001993985.1_ASM199398v1

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Seq: MUVV01000009.1 Burkholderia cenocepacia strain VC6357 VC6357_contig-8000000, whole genome shotgun sequence (19202 bp)
Overview 1 RT 1: 17271-19148 bp Neighborhood of RT #1 [17271, 19202] TnpB_IS66 RVT-GII HTH_Tnp_1 HTH_21 Feature: gene Location: 17271-17603 bp Ori: ONZ56407.1 Feature: domain Description: TnpB_IS66 Location: 17298-17586 bp Feature: domain Description: TnpB_IS66 Location: 1 7298-1 7586 bp Feature: gene Location: 17607-17929 bp Feature: gene Location: 17933-18520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18344-18512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8344-1 851 2 bp Feature: gene Location: 18588-18851 bp Ori: ONZ56408.1 Feature: domain Description: HTH_Tnp_1 Location: 18594-18798 bp Feature: domain Description: HTH_Tnp_1 Location: 1 8594-1 8798 bp Feature: gene Location: 18848-19202 bp Ori: ONZ56410.1 Feature: domain Description: HTH_21 Location: 18983-19148 bp Feature: domain Description: HTH_21 Location: 1 8983-1 91 48 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, HTH_Tnp_1 (pfam01527), HTH_21 (pfam13276)

Seq: MUVV01000077.1 Burkholderia cenocepacia strain VC6357 VC6357_contig-7000006, whole genome shotgun sequence (12226 bp)
Overview 1 RT 1: 8157-11774 bp Neighborhood of RT #1 [8157, 12205] PolY_like COG4544 RVT-GII Feature: gene Location: 8157-9635 bp Ori: ONZ48063.1 Feature: domain Description: PolY_like Location: 8175-9162 bp Feature: domain Description: PolY_like Location: 8175-9162 bp Feature: gene Location: 9556-10272 bp Ori: ONZ48064.1 Feature: domain Description: COG4544 Location: 9661-10096 bp Feature: domain Description: COG4544 Location: 9661-10096 bp Feature: gene Location: 10673-12205 bp Ori: ONZ48065.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11084-11774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11084-11774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII

Seq: MUVV01000154.1 Burkholderia cenocepacia strain VC6357 VC6357_contig-4000012, whole genome shotgun sequence (34160 bp)
Overview 1 RT 1: 166-3637 bp Neighborhood of RT #1 [166, 3651] RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 166-1533 bp Ori: ONZ38711.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: domain Description: GIIM Note: maturase Location: 1174-13 75 bp Feature: gene Location: 1653-2618 bp Ori: ONZ38712.1 Feature: domain Description: GDP_MD_SDR_e Location: 1689-2586 bp Feature: domain Description: GDP_MD_SDR_e Location: 1689-2586 bp Feature: gene Location: 2605-3651 bp Ori: ONZ38713.1 Feature: domain Description: Gmd Location: 2620-3637 bp Feature: domain Description: Gmd Location: 2620-3 63 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089)

Seq: MUVV01000173.1 Burkholderia cenocepacia strain VC6357 VC6357_contig-6000013, whole genome shotgun sequence (18475 bp)
Overview 1 RT 1: 370-3552 bp Neighborhood of RT #1 [370, 3584] RVT-GII D Feature: gene Location: 370-1902 bp Ori: ONZ36845.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781-1471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781-14 71 bp Feature: gene Location: 2030-2326 bp Feature: gene Location: 2514-3584 bp Ori: ONZ36847.1 Feature: domain Description: D Location: 2568-3552 bp Feature: domain Description: D Location: 2568-3552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, D (PHA02561)

Seq: MUVV01000133.1 Burkholderia cenocepacia strain VC6357 VC6357_contig-10000010, whole genome shotgun sequence (1357 bp)
Overview 1 RT 1: 1-1357 bp Neighborhood of RT #1 [1, 1357] RVT-GII Feature: gene Location: 1-293 bp Feature: gene Location: 343-732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367-688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367-688 bp Feature: gene Location: 724-1357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MUVV01000038.1 Burkholderia cenocepacia strain VC6357 VC6357_contig-9000003, whole genome shotgun sequence (66711 bp)
Overview 1 RT 1: 2238-9844 bp Neighborhood of RT #1 [2238, 9891] COG3547 RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 2238-2537 bp Feature: gene Location: 2846-3880 bp Ori: ONZ52978.1 Feature: domain Description: COG3547 Location: 2861-3824 bp Feature: domain Description: COG3547 Location: 286 1-3824 bp Feature: gene Location: 4051-5418 bp Ori: ONZ52979.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4384-4999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4384-4999 bp Feature: domain Description: GIIM Note: maturase Location: 5059-5260 bp Feature: domain Description: GIIM Note: maturase Location: 5059-526 0 bp Feature: gene Location: 5562-8024 bp Ori: ONZ52980.1 Feature: domain Description: MscK Location: 5640-7983 bp Feature: domain Description: MscK Location: 56 40-7983 bp Feature: gene Location: 8473-9891 bp Ori: ONZ52981.1 Feature: domain Description: MFS_SV2_like Location: 8593-9844 bp Feature: domain Description: MFS_SV2_like Location: 8593-9844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)

Seq: MUVV01000029.1 Burkholderia cenocepacia strain VC6357 VC6357_contig-3, whole genome shotgun sequence (119511 bp)
Overview 1 RT 1: 49185-52934 bp Neighborhood of RT #1 [49185, 53005] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49185-49940 bp Ori: ONZ54152.1 Feature: domain Description: his_ut_repres Location: 49263-49935 bp Feature: domain Description: his_ut_repres Location: 49263-49935 bp Feature: gene Location: 50175-50747 bp Ori: ONZ54153.1 Feature: domain Description: FIN Location: 50361-50712 bp Feature: domain Description: FIN Location: 50361-507 12 bp Feature: gene Location: 51001-52350 bp Ori: ONZ54154.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51466-52102 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51466-52102 bp Feature: gene Location: 52323-52529 bp Feature: gene Location: 52676-53005 bp Ori: ONZ54156.1 Feature: domain Description: Histone_HNS Location: 52697-52934 bp Feature: domain Description: Histone_HNS Location: 52697 -52934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUVV01000070.1 Burkholderia cenocepacia strain VC6357 VC6357_contig-6, whole genome shotgun sequence (63046 bp)
Overview 1 RT 1: 370-4551 bp Neighborhood of RT #1 [370, 4551] RVT-GII SRAP Feature: gene Location: 370-1902 bp Ori: ONZ48963.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781-1471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78 1-1471 bp Feature: gene Location: 1958-2869 bp Ori: ONZ48964.1 Feature: domain Description: SRAP Location: 2318-2834 bp Feature: domain Description: SRAP Location: 2318 -28 34 bp Feature: gene Location: 3565-4551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SRAP (pfam02586)

Seq: MUVV01000114.1 Burkholderia cenocepacia strain VC6357 VC6357_contig-3000009, whole genome shotgun sequence (47487 bp)
Overview 1 RT 1: 22-2923 bp Neighborhood of RT #1 [22, 2923] RVT-GII Feature: gene Location: 22-1554 bp Ori: ONZ43706.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1123 bp Feature: gene Location: 2126-2545 bp Feature: gene Location: 2708-2923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII