myRT

myRT report for GCA_001994025.1_ASM199402v1

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Seq: MUVY01000089.1 Burkholderia cenocepacia strain VC7741 VC7741_contig-11, whole genome shotgun sequence (71969 bp)
Overview 1 RT 1: 67419-71169 bp Neighborhood of RT #1 [67419, 71600] SRAP RVT-GII Feature: gene Location: 67419-68405 bp Feature: gene Location: 69101-70012 bp Ori: ONZ81022.1 Feature: domain Description: SRAP Location: 69461-69977 bp Feature: domain Description: SRAP Location: 69461 -69977 bp Feature: gene Location: 70068-71600 bp Ori: ONZ81023.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70479-71169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70479-71 1 69 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MUVY01000127.1 Burkholderia cenocepacia strain VC7741 VC7741_contig-9000014, whole genome shotgun sequence (1932 bp)
Overview 1 RT 1: 255-1867 bp Neighborhood of RT #1 [255, 1932] PRK09409 RVT-GII rve_3 Feature: gene Location: 255-1142 bp Ori: ONZ75336.1 Feature: domain Description: PRK09409 Location: 258-1125 bp Feature: domain Description: PRK09409 Location: 2 58-112 5 bp Feature: gene Location: 1134-1523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1158-1479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1158-1479 bp Feature: gene Location: 1573-1932 bp Ori: ONZ75337.1 Feature: domain Description: rve_3 Location: 1669-1867 bp Feature: domain Description: rve_3 Location: 1669-1867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09409 (IS2 transposase TnpB; Reviewed), RVT-GII, rve_3 (pfam13683)

Seq: MUVY01000095.1 Burkholderia cenocepacia strain VC7741 VC7741_contig-6000011, whole genome shotgun sequence (586451 bp)
Overview 1 RT 1: 139704-144287 bp Neighborhood of RT #1 [139704, 144287] D RVT-GII Feature: gene Location: 139704-140774 bp Ori: ONZ79563.1 Feature: domain Description: D Location: 139758-140742 bp Feature: domain Description: D Location: 13 9758-140742 bp Feature: gene Location: 140962-141258 bp Feature: gene Location: 141386-142918 bp Ori: ONZ79565.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141797-142487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141797-142487 bp Feature: gene Location: 143490-143909 bp Feature: gene Location: 144072-144287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MUVY01000040.1 Burkholderia cenocepacia strain VC7741 VC7741_contig-5, whole genome shotgun sequence (164626 bp)
Overview 1 RT 1: 49185-52934 bp Neighborhood of RT #1 [49185, 53005] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49185-49940 bp Ori: ONZ86966.1 Feature: domain Description: his_ut_repres Location: 49263-49935 bp Feature: domain Description: his_ut_repres Location: 4 9263-4 9935 bp Feature: gene Location: 50175-50747 bp Ori: ONZ86967.1 Feature: domain Description: FIN Location: 50361-50712 bp Feature: domain Description: FIN Location: 50361-50712 bp Feature: gene Location: 51001-52350 bp Ori: ONZ86968.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51466-52102 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 514 66-52102 bp Feature: gene Location: 52323-52529 bp Feature: gene Location: 52676-53005 bp Ori: ONZ86970.1 Feature: domain Description: Histone_HNS Location: 52697-52934 bp Feature: domain Description: Histone_HNS Location: 52697-52934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUVY01000053.1 Burkholderia cenocepacia strain VC7741 VC7741_contig-4000006, whole genome shotgun sequence (63312 bp)
Overview 1 RT 1: 166-5959 bp Neighborhood of RT #1 [166, 6006] RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 166-1533 bp Ori: ONZ84815.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: gene Location: 1677-4139 bp Ori: ONZ84816.1 Feature: domain Description: MscK Location: 1755-4098 bp Feature: domain Description: MscK Location: 175 5 -4098 bp Feature: gene Location: 4588-6006 bp Ori: ONZ84817.1 Feature: domain Description: MFS_SV2_like Location: 4708-5959 bp Feature: domain Description: MFS_SV2_like Location: 4708-5 95 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)

Seq: MUVY01000112.1 Burkholderia cenocepacia strain VC7741 VC7741_contig-6000013, whole genome shotgun sequence (33957 bp)
Overview 1 RT 1: 30307-33634 bp Neighborhood of RT #1 [30307, 33792] Gmd GDP_MD_SDR_e RVT-GII GIIM Feature: gene Location: 30307-31353 bp Ori: ONZ77004.1 Feature: domain Description: Gmd Location: 30322-31339 bp Feature: domain Description: Gmd Location: 30322-31339 bp Feature: gene Location: 31340-32305 bp Ori: ONZ77005.1 Feature: domain Description: GDP_MD_SDR_e Location: 31376-32273 bp Feature: domain Description: GDP_MD_SDR_e Location: 31376 -32273 bp Feature: gene Location: 32425-33792 bp Ori: ONZ77006.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32758-33373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32758-33373 bp Feature: domain Description: GIIM Note: maturase Location: 33433-33634 bp Feature: domain Description: GIIM Note: maturase Location: 33433-336 34 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388)

Seq: MUVY01000063.1 Burkholderia cenocepacia strain VC7741 VC7741_contig-8000007, whole genome shotgun sequence (19215 bp)
Overview 1 RT 1: 1-1712 bp Neighborhood of RT #1 [1, 1729] HTH_Tnp_1 RVT-GII TnpB_IS66 Feature: gene Location: 1-152 bp Feature: gene Location: 149-412 bp Ori: ONZ83865.1 Feature: domain Description: HTH_Tnp_1 Location: 155-359 bp Feature: domain Description: HTH_Tnp_1 Location: 155-359 bp Feature: gene Location: 480-1067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 891-1059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 891-1059 bp Feature: gene Location: 1071-1393 bp Feature: gene Location: 1397-1729 bp Ori: ONZ83866.1 Feature: domain Description: TnpB_IS66 Location: 1424-1712 bp Feature: domain Description: TnpB_IS66 Location: 1424-17 12 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-GII, TnpB_IS66 (pfam05717)

Seq: MUVY01000054.1 Burkholderia cenocepacia strain VC7741 VC7741_contig-5000006, whole genome shotgun sequence (12405 bp)
Overview 1 RT 1: 8336-11953 bp Neighborhood of RT #1 [8336, 12384] PolY_like COG4544 RVT-GII Feature: gene Location: 8336-9814 bp Ori: ONZ84757.1 Feature: domain Description: PolY_like Location: 8354-9341 bp Feature: domain Description: PolY_like Location: 8 354-9341 bp Feature: gene Location: 9735-10451 bp Ori: ONZ84758.1 Feature: domain Description: COG4544 Location: 9840-10275 bp Feature: domain Description: COG4544 Location: 98 40-10275 bp Feature: gene Location: 10852-12384 bp Ori: ONZ84759.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11263-11953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11263-11953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII