myRT

myRT report for GCA_001994035.1_ASM199403v1

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Seq: MUVW01000086.1 Burkholderia cenocepacia strain VC6590 VC6590_contig-2000008, whole genome shotgun sequence (62513 bp)
Overview 1 RT 1: 166-5959 bp Neighborhood of RT #1 [166, 6006] RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 166-1533 bp Ori: ONZ70362.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1 1 1 4 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 74-1 375 bp Feature: gene Location: 1677-4139 bp Ori: ONZ70363.1 Feature: domain Description: MscK Location: 1755-4098 bp Feature: domain Description: MscK Location: 1 755-4098 bp Feature: gene Location: 4588-6006 bp Ori: ONZ70364.1 Feature: domain Description: MFS_SV2_like Location: 4708-5959 bp Feature: domain Description: MFS_SV2_like Location: 4708-5959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)

Seq: MUVW01000111.1 Burkholderia cenocepacia strain VC6590 VC6590_contig-4000010, whole genome shotgun sequence (160911 bp)
Overview 1 RT 1: 111764-116347 bp Neighborhood of RT #1 [111764, 116347] D RVT-GII Feature: gene Location: 111764-112834 bp Ori: ONZ67971.1 Feature: domain Description: D Location: 111818-112802 bp Feature: domain Description: D Location: 111818-112 802 bp Feature: gene Location: 113022-113318 bp Feature: gene Location: 113446-114978 bp Ori: ONZ67973.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113857-114547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113857-114547 bp Feature: gene Location: 115550-115969 bp Feature: gene Location: 116132-116347 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MUVW01000045.1 Burkholderia cenocepacia strain VC6590 VC6590_contig-8000003, whole genome shotgun sequence (103399 bp)
Overview 1 RT 1: 100132-103154 bp Neighborhood of RT #1 [100132, 103312] COG3547 RVT-GII GIIM Feature: gene Location: 100132-100431 bp Feature: gene Location: 100740-101774 bp Ori: ONZ76167.1 Feature: domain Description: COG3547 Location: 100755-101718 bp Feature: domain Description: COG3 547 Location: 100755-101718 bp Feature: gene Location: 101945-103312 bp Ori: ONZ76168.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102278-102893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102278-102893 bp Feature: domain Description: GIIM Note: maturase Location: 102953-103154 bp Feature: domain Description: GIIM Note: maturase Location: 102953 -103 154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: MUVW01000054.1 Burkholderia cenocepacia strain VC6590 VC6590_contig-5, whole genome shotgun sequence (164403 bp)
Overview 1 RT 1: 49077-52826 bp Neighborhood of RT #1 [49077, 52897] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49077-49832 bp Ori: ONZ74872.1 Feature: domain Description: his_ut_repres Location: 49155-49827 bp Feature: domain Description: his_ut_repres Location: 4 9155-4 9827 bp Feature: gene Location: 50067-50639 bp Ori: ONZ74873.1 Feature: domain Description: FIN Location: 50253-50604 bp Feature: domain Description: FIN Location: 50253-50604 bp Feature: gene Location: 50893-52242 bp Ori: ONZ74874.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51358-51994 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51358-51994 bp Feature: gene Location: 52215-52421 bp Feature: gene Location: 52568-52897 bp Ori: ONZ74876.1 Feature: domain Description: Histone_HNS Location: 52589-52826 bp Feature: domain Description: Histone_HNS Location: 52589-52826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUVW01000118.1 Burkholderia cenocepacia strain VC6590 VC6590_contig-6000011, whole genome shotgun sequence (34110 bp)
Overview 1 RT 1: 30460-33787 bp Neighborhood of RT #1 [30460, 33945] Gmd GDP_MD_SDR_e RVT-GII GIIM Feature: gene Location: 30460-31506 bp Ori: ONZ67029.1 Feature: domain Description: Gmd Location: 30475-31492 bp Feature: domain Description: Gmd Location: 30475 -31492 bp Feature: gene Location: 31493-32458 bp Ori: ONZ67030.1 Feature: domain Description: GDP_MD_SDR_e Location: 31529-32426 bp Feature: domain Description: GDP_MD_SDR_e Location: 315 29-32426 bp Feature: gene Location: 32578-33945 bp Ori: ONZ67031.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32911-33526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32911-335 26 bp Feature: domain Description: GIIM Note: maturase Location: 33586-33787 bp Feature: domain Description: GIIM Note: maturase Location: 335 86-33787 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388)

Seq: MUVW01000068.1 Burkholderia cenocepacia strain VC6590 VC6590_contig-5000006, whole genome shotgun sequence (19152 bp)
Overview 1 RT 1: 17271-19148 bp Neighborhood of RT #1 [17271, 19152] TnpB_IS66 RVT-GII HTH_Tnp_1 HTH_21 Feature: gene Location: 17271-17603 bp Ori: ONZ73110.1 Feature: domain Description: TnpB_IS66 Location: 17298-17586 bp Feature: domain Description: TnpB_IS6 6 Location: 17298-17586 bp Feature: gene Location: 17607-17929 bp Feature: gene Location: 17933-18520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18344-18512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18344-18512 bp Feature: gene Location: 18588-18851 bp Ori: ONZ73111.1 Feature: domain Description: HTH_Tnp_1 Location: 18594-18798 bp Feature: domain Description: HTH_Tnp_1 Location: 18594-18798 bp Feature: gene Location: 18848-19152 bp Ori: ONZ73113.1 Feature: domain Description: HTH_21 Location: 18983-19148 bp Feature: domain Description: HTH_21 Location: 18983-19148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, HTH_Tnp_1 (pfam01527), HTH_21 (pfam13276)

Seq: MUVW01000162.1 Burkholderia cenocepacia strain VC6590 VC6590_contig-9000015, whole genome shotgun sequence (2098 bp)
Overview 1 RT 1: 1-1877 bp Neighborhood of RT #1 [1, 1894] Tra5 RVT-GII PRK09409 Feature: gene Location: 1-576 bp Ori: ONZ60804.1 Feature: domain Description: Tra5 Location: 40-544 bp Feature: domain Description: Tra5 Location: 40-544 bp Feature: gene Location: 626-1015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 650-971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 650-97 1 bp Feature: gene Location: 1007-1894 bp Ori: ONZ60803.1 Feature: domain Description: PRK09409 Location: 1010-1877 bp Feature: domain Description: PRK09409 Location: 1010-187 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PRK09409 (IS2 transposase TnpB; Reviewed)

Seq: MUVW01000159.1 Burkholderia cenocepacia strain VC6590 VC6590_contig-6000015, whole genome shotgun sequence (4242 bp)
Overview 1 RT 1: 22-3597 bp Neighborhood of RT #1 [22, 4070] RVT-GII COG4544 PolY_like Feature: gene Location: 22-1554 bp Ori: ONZ61170.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1123 bp Feature: gene Location: 1955-2671 bp Ori: ONZ61171.1 Feature: domain Description: COG4544 Location: 2060-2495 bp Feature: domain Description: COG4544 Location: 2060-2495 bp Feature: gene Location: 2592-4070 bp Ori: ONZ61172.1 Feature: domain Description: PolY_like Location: 2610-3597 bp Feature: domain Description: PolY_like Location: 2610-3597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG4544 (Uncharacterized conserved protein ), PolY_like (cd03468)

Seq: MUVW01000059.1 Burkholderia cenocepacia strain VC6590 VC6590_contig-5000005, whole genome shotgun sequence (7090 bp)
Overview 1 RT 1: 2540-6290 bp Neighborhood of RT #1 [2540, 6721] SRAP RVT-GII Feature: gene Location: 2540-3526 bp Feature: gene Location: 4222-5133 bp Ori: ONZ74085.1 Feature: domain Description: SRAP Location: 4582-5098 bp Feature: domain Description: SRAP Location: 4582-509 8 bp Feature: gene Location: 5189-6721 bp Ori: ONZ74086.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5600-6290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5600-629 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII