myRT

myRT report for GCA_001994075.1_ASM199407v1

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Seq: MUWA01000117.1 Burkholderia cenocepacia strain VC7932 VC7932_contig-4000015, whole genome shotgun sequence (62448 bp)
Overview 1 RT 1: 56443-62125 bp Neighborhood of RT #1 [56443, 62283] MFS_SV2_like MscK RVT-GII GIIM Feature: gene Location: 56443-57861 bp Ori: ONZ93314.1 Feature: domain Description: MFS_SV2_like Location: 56563-57814 bp Feature: domain Description: MFS_SV2_like Location: 56563-5781 4 bp Feature: gene Location: 58310-60772 bp Ori: ONZ93315.1 Feature: domain Description: MscK Location: 58388-60731 bp Feature: domain Description: MscK Location: 58388-60731 bp Feature: gene Location: 60916-62283 bp Ori: ONZ93316.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61249-61864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 249-61 864 bp Feature: domain Description: GIIM Note: maturase Location: 61924-62125 bp Feature: domain Description: GIIM Note: maturase Location: 61 924-621 25 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_SV2_like (cd17316), MscK (COG3264), RVT-GII, GIIM (pfam08388)

Seq: MUWA01000110.1 Burkholderia cenocepacia strain VC7932 VC7932_contig-10000014, whole genome shotgun sequence (2082 bp)
Overview 1 RT 1: 205-2082 bp Neighborhood of RT #1 [205, 2082] PRK09409 RVT-GII Feature: gene Location: 205-1092 bp Ori: ONZ94822.1 Feature: domain Description: PRK09409 Location: 208-1075 bp Feature: domain Description: PRK09409 Location: 2 08-1075 bp Feature: gene Location: 1084-1473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1108-1429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1108-142 9 bp Feature: gene Location: 1523-2082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09409 (IS2 transposase TnpB; Reviewed), RVT-GII

Seq: MUWA01000033.1 Burkholderia cenocepacia strain VC7932 VC7932_contig-9000003, whole genome shotgun sequence (65630 bp)
Overview 1 RT 1: 30121-35405 bp Neighborhood of RT #1 [30121, 35419] COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 30121-30420 bp Feature: gene Location: 30729-31763 bp Ori: OOA05692.1 Feature: domain Description: COG3547 Location: 30744-31707 bp Feature: domain Description: COG3 547 Location: 3 0744-3 1707 bp Feature: gene Location: 31934-33301 bp Ori: OOA05693.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32267-32882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 2267-3 2882 bp Feature: domain Description: GIIM Note: maturase Location: 32942-33143 bp Feature: domain Description: GIIM Note: maturase Location: 3 2942-3 3 143 bp Feature: gene Location: 33421-34386 bp Ori: OOA05694.1 Feature: domain Description: GDP_MD_SDR_e Location: 33457-34354 bp Feature: domain Description: GDP_MD_SDR_e Location: 3 3 457-3 43 54 bp Feature: gene Location: 34373-35419 bp Ori: OOA05695.1 Feature: domain Description: Gmd Location: 34388-35405 bp Feature: domain Description: Gmd Location: 3 43 88-3 5405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089)

Seq: MUWA01000046.1 Burkholderia cenocepacia strain VC7932 VC7932_contig-1000006, whole genome shotgun sequence (182693 bp)
Overview 1 RT 1: 129689-133504 bp Neighborhood of RT #1 [129689, 133509] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 129689-130018 bp Ori: OOA04356.1 Feature: domain Description: Histone_HNS Location: 129710-129947 bp Feature: domain Description: Histone_HNS Location: 129710-12994 7 bp Feature: gene Location: 130165-130371 bp Feature: gene Location: 130344-131693 bp Ori: OOA04358.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 130809-131445 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 130809-1314 4 5 bp Feature: gene Location: 131947-132519 bp Ori: OOA04359.1 Feature: domain Description: FIN Location: 132133-132484 bp Feature: domain Description: FIN Location: 132133-1324 84 bp Feature: gene Location: 132754-133509 bp Ori: OOA04360.1 Feature: domain Description: his_ut_repres Location: 132832-133504 bp Feature: domain Description: his_ut_repres Location: 132832-133504 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUWA01000058.1 Burkholderia cenocepacia strain VC7932 VC7932_contig-6000007, whole genome shotgun sequence (19104 bp)
Overview 1 RT 1: 54-1617 bp Neighborhood of RT #1 [54, 1634] HTH_Tnp_1 RVT-GII TnpB_IS66 Feature: gene Location: 54-317 bp Ori: OOA02447.1 Feature: domain Description: HTH_Tnp_1 Location: 60-264 bp Feature: domain Description: HTH_Tnp_1 Location: 60-264 bp Feature: gene Location: 385-972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 796-964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 796-964 bp Feature: gene Location: 976-1298 bp Feature: gene Location: 1302-1634 bp Ori: OOA02448.1 Feature: domain Description: TnpB_IS66 Location: 1329-1617 bp Feature: domain Description: TnpB_IS66 Location: 1329-1617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-GII, TnpB_IS66 (pfam05717)

Seq: MUWA01000084.1 Burkholderia cenocepacia strain VC7932 VC7932_contig-2000011, whole genome shotgun sequence (183562 bp)
Overview 1 RT 1: 134415-138998 bp Neighborhood of RT #1 [134415, 138998] D RVT-GII Feature: gene Location: 134415-135485 bp Ori: ONZ98921.1 Feature: domain Description: D Location: 134469-135453 bp Feature: domain Description: D Location: 13446 9-135453 bp Feature: gene Location: 135673-135969 bp Feature: gene Location: 136097-137629 bp Ori: ONZ98923.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136508-137198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136 508-137198 bp Feature: gene Location: 138201-138620 bp Feature: gene Location: 138783-138998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MUWA01000119.1 Burkholderia cenocepacia strain VC7932 VC7932_contig-6000015, whole genome shotgun sequence (12310 bp)
Overview 1 RT 1: 8241-11858 bp Neighborhood of RT #1 [8241, 12289] PolY_like COG4544 RVT-GII Feature: gene Location: 8241-9719 bp Ori: ONZ93170.1 Feature: domain Description: PolY_like Location: 8259-9246 bp Feature: domain Description: PolY_like Location: 8259-9246 bp Feature: gene Location: 9640-10356 bp Ori: ONZ93171.1 Feature: domain Description: COG4544 Location: 9745-10180 bp Feature: domain Description: COG4544 Location: 97 45-10180 bp Feature: gene Location: 10757-12289 bp Ori: ONZ93172.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11168-11858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11168-11858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII

Seq: MUWA01000086.1 Burkholderia cenocepacia strain VC7932 VC7932_contig-4000011, whole genome shotgun sequence (71925 bp)
Overview 1 RT 1: 67375-71125 bp Neighborhood of RT #1 [67375, 71556] SRAP RVT-GII Feature: gene Location: 67375-68361 bp Feature: gene Location: 69057-69968 bp Ori: ONZ98459.1 Feature: domain Description: SRAP Location: 69417-69933 bp Feature: domain Description: SRAP Location: 69417-69933 bp Feature: gene Location: 70024-71556 bp Ori: ONZ98460.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70435-71125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70435-71125 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII