myRT

myRT report for GCA_001994085.1_ASM199408v1

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Seq: MUWC01000069.1 Burkholderia cenocepacia strain VC4895 VC4895_contig-7000006, whole genome shotgun sequence (43390 bp)
Overview 1 RT 1: 10718-16143 bp Neighborhood of RT #1 [10718, 16163] DLH GatA RVT-GII GIIM fadh2 YvlD Feature: gene Location: 10718-11410 bp Ori: OOA12359.1 Feature: domain Description: DLH Location: 10730-11408 bp Feature: domain Description: DLH Location: 1 0730-1 1 408 bp Feature: gene Location: 11491-12969 bp Ori: OOA12391.1 Feature: domain Description: GatA Location: 11518-12946 bp Feature: domain Description: GatA Location: 1 1 51 8-1 2946 bp Feature: gene Location: 13079-14476 bp Ori: OOA12360.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13412-14030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 341 2-1 4030 bp Feature: domain Description: GIIM Note: maturase Location: 14081-14291 bp Feature: domain Description: GIIM Note: maturase Location: 1 4081 -1 4291 bp Feature: gene Location: 14949-15779 bp Ori: OOA12361.1 Feature: domain Description: fadh2 Location: 14967-15771 bp Feature: domain Description: fadh2 Location: 1 4967-1 5771 bp Feature: gene Location: 15810-16163 bp Ori: OOA12362.1 Feature: domain Description: YvlD Location: 15813-16143 bp Feature: domain Description: YvlD Location: 1 581 3-1 61 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DLH (pfam01738), GatA (COG0154), RVT-GII, GIIM (pfam08388), fadh2 (TIGR00676), YvlD (COG1950)

Seq: MUWC01000076.1 Burkholderia cenocepacia strain VC4895 VC4895_contig-2000007, whole genome shotgun sequence (237719 bp)
Overview 1 RT 1: 103994-107743 bp Neighborhood of RT #1 [103994, 107814] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 103994-104749 bp Ori: OOA11673.1 Feature: domain Description: his_ut_repres Location: 104072-104744 bp Feature: domain Description: his_ut_repres Location: 104072 -104744 bp Feature: gene Location: 104984-105556 bp Ori: OOA11674.1 Feature: domain Description: FIN Location: 105170-105521 bp Feature: domain Description: FIN Location: 105170-10552 1 bp Feature: gene Location: 105810-107159 bp Ori: OOA11675.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 106275-106911 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1062 75-106911 bp Feature: gene Location: 107132-107338 bp Feature: gene Location: 107485-107814 bp Ori: OOA11677.1 Feature: domain Description: Histone_HNS Location: 107506-107743 bp Feature: domain Description: Histone_HNS Location: 107506-107743 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUWC01000021.1 Burkholderia cenocepacia strain VC4895 VC4895_contig-9000001, whole genome shotgun sequence (62936 bp)
Overview 1 RT 1: 59692-62929 bp Neighborhood of RT #1 [59692, 62929] PRK14673 RsmI RVT-GII GIIM Feature: gene Location: 59692-60168 bp Ori: OOA19217.1 Feature: domain Description: PRK14673 Location: 59743-60160 bp Feature: domain Description: PRK14673 Location: 59743 -60160 bp Feature: gene Location: 60167-61054 bp Ori: OOA19218.1 Feature: domain Description: RsmI Location: 60215-61028 bp Feature: domain Description: RsmI Location: 60215-61028 bp Feature: gene Location: 61162-62529 bp Ori: OOA19219.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61495-62110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61495-62110 bp Feature: domain Description: GIIM Note: maturase Location: 62170-62371 bp Feature: domain Description: GIIM Note: maturase Location: 62170-623 71 bp Feature: gene Location: 62600-62929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14673 (hypothetical protein; Provisional), RsmI (COG0313), RVT-GII, GIIM (pfam08388)

Seq: MUWC01000061.1 Burkholderia cenocepacia strain VC4895 VC4895_contig-7000005, whole genome shotgun sequence (119371 bp)
Overview 1 RT 1: 109535-117912 bp Neighborhood of RT #1 [109535, 118133] PRK05643 gyrB RVT-Retrons YjgR YjgR SIR2_2 Feature: gene Location: 109535-110641 bp Ori: OOA13497.1 Feature: domain Description: PRK05643 Location: 109547-110639 bp Feature: domain Description: PRK0564 3 Location: 10954 7-110639 bp Feature: gene Location: 110834-113308 bp Ori: OOA13498.1 Feature: domain Description: gyrB Location: 110864-113306 bp Feature: domain Description: gyrB Location: 110864 -113306 bp Feature: gene Location: 113734-115485 bp Ori: OOA13499.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113869-114511 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113869-114 511 bp Feature: gene Location: 115580-117301 bp Ori: OOA13500.1 Feature: domain Description: YjgR Location: 116063-116327 bp Feature: domain Description: YjgR Location: 116063-116327 bp Feature: domain Description: YjgR Location: 116822-117224 bp Feature: domain Description: YjgR Location: 116822-117224 bp Feature: gene Location: 117294-118133 bp Ori: OOA13501.1 Feature: domain Description: SIR2_2 Location: 117468-117912 bp Feature: domain Description: SIR2_2 Location: 1174 68-117912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05643 (DNA polymerase III subunit beta; Validated), gyrB (TIGR01059), RVT-Retrons, YjgR (COG0433), SIR2_2 (pfam13289)

Seq: MUWC01000033.1 Burkholderia cenocepacia strain VC4895 VC4895_contig-7000002, whole genome shotgun sequence (142807 bp)
Overview 1 RT 1: 1-6667 bp Neighborhood of RT #1 [1, 6667] IS285 RVT-UG5 HATPase_c_3 Feature: gene Location: 1-467 bp Ori: OOA18051.1 Feature: domain Description: IS285 Location: 55-466 bp Feature: domain Description: IS285 Location: 5 5 -466 bp Feature: gene Location: 652-3645 bp Ori: OOA18173.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1123-1597 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1123-15 97 bp Feature: gene Location: 3711-5726 bp Ori: OOA18052.1 Feature: domain Description: HATPase_c_3 Location: 3780-4104 bp Feature: domain Description: HATPase_c_3 Location: 3780-4104 bp Feature: gene Location: 5978-6667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-UG5, HATPase_c_3 (pfam13589)