myRT

myRT report for GCA_001994115.1_ASM199411v1

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Seq: MUWB01000114.1 Burkholderia cenocepacia strain VC4386 VC4386_contig-7000009, whole genome shotgun sequence (56047 bp)
Overview 1 RT 1: 7-3236 bp Neighborhood of RT #1 [7, 3244] RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 7-336 bp Feature: gene Location: 407-1774 bp Ori: OOA31169.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 740-1355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 740-1 355 bp Feature: domain Description: GIIM Note: maturase Location: 1415-1616 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 5-1 61 6 bp Feature: gene Location: 1882-2769 bp Ori: OOA31170.1 Feature: domain Description: RsmI Location: 1930-2743 bp Feature: domain Description: RsmI Location: 1 930-2743 bp Feature: gene Location: 2768-3244 bp Ori: OOA31171.1 Feature: domain Description: PRK14673 Location: 2819-3236 bp Feature: domain Description: PRK1 4673 Location: 281 9-3236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)

Seq: MUWB01000111.1 Burkholderia cenocepacia strain VC4386 VC4386_contig-4000009, whole genome shotgun sequence (48108 bp)
Overview 1 RT 1: 41442-48107 bp Neighborhood of RT #1 [41442, 48108] HATPase_c_3 RVT-UG5 IS285 Feature: gene Location: 41442-42131 bp Feature: gene Location: 42383-44398 bp Ori: OOA31369.1 Feature: domain Description: HATPase_c_3 Location: 42452-42776 bp Feature: domain Description: HATPase_c_3 Location: 42 452 -42 776 bp Feature: gene Location: 44464-47457 bp Ori: OOA31374.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44935-45409 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44935-45409 bp Feature: gene Location: 47642-48108 bp Ori: OOA31370.1 Feature: domain Description: IS285 Location: 47696-48107 bp Feature: domain Description: IS2 85 Location: 47696-48107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, IS285 (COG3328)

Seq: MUWB01000077.1 Burkholderia cenocepacia strain VC4386 VC4386_contig-4000006, whole genome shotgun sequence (43914 bp)
Overview 1 RT 1: 11098-16523 bp Neighborhood of RT #1 [11098, 16543] DLH GatA RVT-GII GIIM fadh2 YvlD Feature: gene Location: 11098-11790 bp Ori: OOA35656.1 Feature: domain Description: DLH Location: 11110-11788 bp Feature: domain Description: DLH Location: 11110-11788 bp Feature: gene Location: 11871-13349 bp Ori: OOA35689.1 Feature: domain Description: GatA Location: 11898-13326 bp Feature: domain Description: GatA Location: 11898-13 3 26 bp Feature: gene Location: 13459-14856 bp Ori: OOA35657.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13792-14410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 792-14410 bp Feature: domain Description: GIIM Note: maturase Location: 14461-14671 bp Feature: domain Description: GIIM Note: maturase Location: 14461-14671 bp Feature: gene Location: 15329-16159 bp Ori: OOA35658.1 Feature: domain Description: fadh2 Location: 15347-16151 bp Feature: domain Description: fadh2 Location: 153 47-16151 bp Feature: gene Location: 16190-16543 bp Ori: OOA35659.1 Feature: domain Description: YvlD Location: 16193-16523 bp Feature: domain Description: YvlD Location: 16193 -16523 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DLH (pfam01738), GatA (COG0154), RVT-GII, GIIM (pfam08388), fadh2 (TIGR00676), YvlD (COG1950)

Seq: MUWB01000073.1 Burkholderia cenocepacia strain VC4386 VC4386_contig-6, whole genome shotgun sequence (119385 bp)
Overview 1 RT 1: 1239-9835 bp Neighborhood of RT #1 [1239, 9837] SIR2_2 YjgR YjgR RVT-Retrons gyrB PRK05643 Feature: gene Location: 1239-2078 bp Ori: OOA35978.1 Feature: domain Description: SIR2_2 Location: 1413-1857 bp Feature: domain Description: SIR2_2 Location: 14 13-1857 bp Feature: gene Location: 2071-3792 bp Ori: OOA35979.1 Feature: domain Description: YjgR Location: 2554-2818 bp Feature: domain Description: YjgR Location: 2554 -2818 bp Feature: domain Description: YjgR Location: 3313-3715 bp Feature: domain Description: YjgR Location: 3313-3715 bp Feature: gene Location: 3887-5638 bp Ori: OOA35980.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4022-4664 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 022-4 664 bp Feature: gene Location: 6064-8538 bp Ori: OOA35981.1 Feature: domain Description: gyrB Location: 6094-8536 bp Feature: domain Description: gyrB Location: 6094 -8536 bp Feature: gene Location: 8731-9837 bp Ori: OOA35982.1 Feature: domain Description: PRK05643 Location: 8743-9835 bp Feature: domain Description: PRK0564 3 Location: 874 3-9835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIR2_2 (pfam13289), YjgR (COG0433), RVT-Retrons, gyrB (TIGR01059), PRK05643 (DNA polymerase III subunit beta; Validated)

Seq: MUWB01000152.1 Burkholderia cenocepacia strain VC4386 VC4386_contig-8000013, whole genome shotgun sequence (164573 bp)
Overview 1 RT 1: 129744-133559 bp Neighborhood of RT #1 [129744, 133564] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 129744-130073 bp Ori: OOA25629.1 Feature: domain Description: Histone_HNS Location: 129765-130002 bp Feature: domain Description: Histone_HNS Location: 129765 -130002 bp Feature: gene Location: 130220-130426 bp Feature: gene Location: 130399-131748 bp Ori: OOA25631.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 130864-131500 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 130864-1315 00 bp Feature: gene Location: 132002-132574 bp Ori: OOA25632.1 Feature: domain Description: FIN Location: 132188-132539 bp Feature: domain Description: FIN Location: 132188-1325 39 bp Feature: gene Location: 132809-133564 bp Ori: OOA25633.1 Feature: domain Description: his_ut_repres Location: 132887-133559 bp Feature: domain Description: his_ut_repres Location: 132887-1335 5 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)